Variant report

Variant	rs73656575
Chromosome Location	chr9:118646396-118646397
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:118646139..118646652-chr9:118914025..118914897,2	MCF-7	breast:
2	chr9:118455999..118456785-chr9:118645700..118646640,3	MCF-7	breast:
3	chr9:118645760..118646664-chr9:119333988..119335002,4	MCF-7	breast:
4	chr9:118646069..118646649-chr9:118874353..118875139,3	MCF-7	breast:
5	chr9:118645804..118646662-chr9:119253147..119254123,2	MCF-7	breast:
6	chr9:118355579..118356098-chr9:118645880..118646443,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs55876715	1.00[AMR][1000 genomes]
rs55914176	1.00[AMR][1000 genomes]
rs55925310	1.00[AMR][1000 genomes]
rs56102162	1.00[AMR][1000 genomes]
rs57469122	1.00[AMR][1000 genomes]
rs58999847	1.00[AMR][1000 genomes]
rs59445383	1.00[AMR][1000 genomes]
rs60171201	1.00[AMR][1000 genomes]
rs60240402	1.00[AMR][1000 genomes]
rs73654588	1.00[AMR][1000 genomes]
rs73654589	1.00[AMR][1000 genomes]
rs73654602	1.00[AMR][1000 genomes]
rs73656506	1.00[AMR][1000 genomes]
rs73656507	1.00[AMR][1000 genomes]
rs73656508	1.00[AMR][1000 genomes]
rs73656510	1.00[AMR][1000 genomes]
rs73656511	1.00[AMR][1000 genomes]
rs73656545	1.00[AMR][1000 genomes]
rs73656546	1.00[AMR][1000 genomes]
rs73656547	1.00[AMR][1000 genomes]
rs73656548	1.00[AMR][1000 genomes]
rs73656549	1.00[AMR][1000 genomes]
rs73656550	1.00[AMR][1000 genomes]
rs73656551	1.00[AMR][1000 genomes]
rs73656552	1.00[AMR][1000 genomes]
rs73656597	1.00[AMR][1000 genomes]
rs73656598	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv916622	chr9:118206309-118952390	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv540207	chr9:118206311-118920304	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv491661	chr9:118206312-118802177	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1050714	chr9:118619303-118690263	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118644800-118647600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:118645000-118647400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:118645000-118647400	Enhancers	A549	lung
4	chr9:118645000-118647600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:118645000-118647600	Enhancers	NHDF-Ad	bronchial
6	chr9:118645200-118647200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr9:118645400-118646400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:118645400-118647200	Enhancers	Placenta	Placenta
9	chr9:118645400-118647400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:118645800-118646400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:118646000-118648600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:118646200-118646600	Weak transcription	NHLF	lung
13	chr9:118646200-118646800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:118646200-118654600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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