Variant report

Variant	rs55925310
Chromosome Location	chr9:118453360-118453361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs55876715	1.00[AMR][1000 genomes]
rs55914176	1.00[AMR][1000 genomes]
rs56102162	1.00[AMR][1000 genomes]
rs56359809	1.00[AMR][1000 genomes]
rs57469122	1.00[AMR][1000 genomes]
rs58188081	1.00[AMR][1000 genomes]
rs58999847	1.00[AMR][1000 genomes]
rs59445383	1.00[AMR][1000 genomes]
rs59578956	1.00[AMR][1000 genomes]
rs60171201	1.00[AMR][1000 genomes]
rs60193688	1.00[AMR][1000 genomes]
rs60240402	1.00[AMR][1000 genomes]
rs61017330	1.00[AMR][1000 genomes]
rs61345813	1.00[AMR][1000 genomes]
rs73654588	1.00[AMR][1000 genomes]
rs73654589	1.00[AMR][1000 genomes]
rs73654602	1.00[AMR][1000 genomes]
rs73656506	1.00[AMR][1000 genomes]
rs73656507	1.00[AMR][1000 genomes]
rs73656508	1.00[AMR][1000 genomes]
rs73656510	1.00[AMR][1000 genomes]
rs73656511	1.00[AMR][1000 genomes]
rs73656545	1.00[AMR][1000 genomes]
rs73656546	1.00[AMR][1000 genomes]
rs73656547	1.00[AMR][1000 genomes]
rs73656548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656549	1.00[AMR][1000 genomes]
rs73656550	1.00[AMR][1000 genomes]
rs73656551	1.00[AMR][1000 genomes]
rs73656552	1.00[AMR][1000 genomes]
rs73656575	1.00[AMR][1000 genomes]
rs73656597	1.00[AMR][1000 genomes]
rs73656766	1.00[AMR][1000 genomes]
rs73656767	1.00[AMR][1000 genomes]
rs73656768	1.00[AMR][1000 genomes]
rs73656770	1.00[AMR][1000 genomes]
rs73656771	1.00[AMR][1000 genomes]
rs73656772	1.00[AMR][1000 genomes]
rs73656775	1.00[AMR][1000 genomes]
rs73656776	1.00[AMR][1000 genomes]
rs73656777	1.00[AMR][1000 genomes]
rs73656779	1.00[AMR][1000 genomes]
rs73656780	1.00[AMR][1000 genomes]
rs73656781	1.00[AMR][1000 genomes]
rs73656784	1.00[AMR][1000 genomes]
rs73656785	1.00[AMR][1000 genomes]
rs7850382	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv916622	chr9:118206309-118952390	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv540207	chr9:118206311-118920304	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv491661	chr9:118206312-118802177	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1047164	chr9:118286742-118456851	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118451000-118455200	Enhancers	Hela-S3	cervix
2	chr9:118451200-118453600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:118452400-118454200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:118452400-118454800	Enhancers	NHEK	skin
5	chr9:118452600-118458200	Enhancers	NHDF-Ad	bronchial
6	chr9:118452800-118454600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:118452800-118454600	Enhancers	NH-A	brain
8	chr9:118452800-118455200	Enhancers	HMEC	breast
9	chr9:118452800-118457400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:118452800-118457800	Enhancers	Osteobl	bone
11	chr9:118452800-118458000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:118453000-118453600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:118453000-118453800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:118453000-118454200	Enhancers	A549	lung
15	chr9:118453000-118454600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:118453000-118456000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:118453000-118456800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr9:118453200-118453400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr9:118453200-118453800	Enhancers	Pancreas	Pancrea
20	chr9:118453200-118454000	Enhancers	Adipose Nuclei	Adipose
21	chr9:118453200-118454000	Enhancers	HSMMtube	muscle
22	chr9:118453200-118454200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr9:118453200-118454200	Enhancers	Placenta Amnion	Placenta Amnion
24	chr9:118453200-118454200	ZNF genes & repeats	HSMM	muscle
25	chr9:118453200-118454800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr9:118453200-118455000	Enhancers	NHLF	lung

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