Variant report

Variant	rs73656770
Chromosome Location	chr9:118353145-118353146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:118346081..118348622-chr9:118350631..118353525,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DEC1-1	chr9:118352079-118353358	ENSG00000197486
2	lnc-DEC1-1	chr9:118353087-118353193	ucscGeneNc_uc004bju_1

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs55876715	1.00[AMR][1000 genomes]
rs55914176	1.00[AMR][1000 genomes]
rs55925310	1.00[AMR][1000 genomes]
rs56359809	1.00[AMR][1000 genomes]
rs57469122	1.00[AMR][1000 genomes]
rs58188081	1.00[AMR][1000 genomes]
rs59578956	1.00[AMR][1000 genomes]
rs60193688	1.00[AMR][1000 genomes]
rs60240402	1.00[AMR][1000 genomes]
rs61017330	1.00[AMR][1000 genomes]
rs61345813	1.00[AMR][1000 genomes]
rs73654588	1.00[AMR][1000 genomes]
rs73654589	1.00[AMR][1000 genomes]
rs73654602	1.00[AMR][1000 genomes]
rs73656506	1.00[AMR][1000 genomes]
rs73656507	1.00[AMR][1000 genomes]
rs73656508	1.00[AMR][1000 genomes]
rs73656510	1.00[AMR][1000 genomes]
rs73656511	1.00[AMR][1000 genomes]
rs73656545	1.00[AMR][1000 genomes]
rs73656546	1.00[AMR][1000 genomes]
rs73656547	1.00[AMR][1000 genomes]
rs73656762	0.81[AFR][1000 genomes]
rs73656766	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656768	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656771	1.00[AMR][1000 genomes]
rs73656772	1.00[AMR][1000 genomes]
rs73656775	1.00[AMR][1000 genomes]
rs73656776	1.00[AMR][1000 genomes]
rs73656777	1.00[AMR][1000 genomes]
rs73656779	1.00[AMR][1000 genomes]
rs73656780	1.00[AMR][1000 genomes]
rs73656781	1.00[AMR][1000 genomes]
rs73656784	1.00[AMR][1000 genomes]
rs73656785	1.00[AMR][1000 genomes]
rs7850382	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv916622	chr9:118206309-118952390	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv540207	chr9:118206311-118920304	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv491661	chr9:118206312-118802177	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv831698	chr9:118284259-118446456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1047164	chr9:118286742-118456851	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118351400-118354800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr9:118351400-118357400	Enhancers	HMEC	breast
3	chr9:118351600-118353600	Enhancers	NHLF	lung
4	chr9:118351600-118354000	Enhancers	Hela-S3	cervix
5	chr9:118351600-118358200	Enhancers	Osteobl	bone
6	chr9:118351800-118353200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:118351800-118353200	Enhancers	HUVEC	blood vessel
8	chr9:118351800-118353400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:118351800-118353600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:118351800-118355000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:118351800-118358200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:118351800-118358200	Enhancers	NHDF-Ad	bronchial
13	chr9:118352000-118353800	Weak transcription	A549	lung
14	chr9:118352000-118354800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:118352000-118355000	Enhancers	NH-A	brain
16	chr9:118352200-118353600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:118352400-118353400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr9:118352600-118354200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:118352600-118356200	Weak transcription	Fetal Lung	lung
20	chr9:118352800-118353800	Weak transcription	Adipose Nuclei	Adipose
21	chr9:118352800-118358400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:118353000-118354000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:118353000-118354000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr9:118353000-118354000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr9:118353000-118354000	Weak transcription	HSMMtube	muscle
26	chr9:118353000-118354000	Weak transcription	NHEK	skin
27	chr9:118353000-118354200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr9:118353000-118354200	Weak transcription	HSMM	muscle

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