Variant report

Variant	rs73656771
Chromosome Location	chr9:118357802-118357803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:118357640..118358284-chr9:119334212..119334746,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs55876715	1.00[AMR][1000 genomes]
rs55914176	1.00[AMR][1000 genomes]
rs55925310	1.00[AMR][1000 genomes]
rs56359809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57469122	1.00[AMR][1000 genomes]
rs58188081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59578956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60171201	1.00[AMR][1000 genomes]
rs60193688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60240402	1.00[AMR][1000 genomes]
rs61017330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61345813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73654588	1.00[AMR][1000 genomes]
rs73654589	1.00[AMR][1000 genomes]
rs73654602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656506	1.00[AMR][1000 genomes]
rs73656507	1.00[AMR][1000 genomes]
rs73656508	1.00[AMR][1000 genomes]
rs73656510	1.00[AMR][1000 genomes]
rs73656511	1.00[AMR][1000 genomes]
rs73656545	1.00[AMR][1000 genomes]
rs73656546	1.00[AMR][1000 genomes]
rs73656547	1.00[AMR][1000 genomes]
rs73656548	1.00[AMR][1000 genomes]
rs73656766	1.00[AMR][1000 genomes]
rs73656767	1.00[AMR][1000 genomes]
rs73656768	1.00[AMR][1000 genomes]
rs73656770	1.00[AMR][1000 genomes]
rs73656772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656775	1.00[AMR][1000 genomes]
rs73656776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656780	1.00[AMR][1000 genomes]
rs73656781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656785	1.00[AMR][1000 genomes]
rs7850382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv916622	chr9:118206309-118952390	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv540207	chr9:118206311-118920304	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv491661	chr9:118206312-118802177	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv831698	chr9:118284259-118446456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1047164	chr9:118286742-118456851	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118351600-118358200	Enhancers	Osteobl	bone
2	chr9:118351800-118358200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:118351800-118358200	Enhancers	NHDF-Ad	bronchial
4	chr9:118352800-118358400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:118353800-118358800	Enhancers	A549	lung
6	chr9:118354000-118358200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:118354200-118358000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:118354200-118358200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:118354200-118358200	Enhancers	HSMM	muscle
10	chr9:118354400-118358000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:118354400-118358000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:118354400-118358000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:118354400-118358000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:118354400-118358000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr9:118354400-118358000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr9:118354400-118358200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr9:118354400-118358200	Weak transcription	Placenta	Placenta
18	chr9:118354400-118358400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr9:118354400-118358600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:118354400-118359200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr9:118354600-118358200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr9:118354600-118358400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr9:118355200-118358400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr9:118355400-118358200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:118355400-118358200	Enhancers	NH-A	brain
26	chr9:118355800-118358200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr9:118356200-118358200	Enhancers	HSMMtube	muscle
28	chr9:118356200-118358400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr9:118356200-118361400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr9:118356600-118358400	Enhancers	Hela-S3	cervix
31	chr9:118357000-118358000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:118357000-118358200	Weak transcription	Fetal Stomach	stomach
33	chr9:118357000-118361600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr9:118357200-118358000	Weak transcription	NHLF	lung
35	chr9:118357200-118358200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:118357200-118367000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr9:118357400-118358400	Weak transcription	NHEK	skin
38	chr9:118357400-118360800	Weak transcription	HMEC	breast
39	chr9:118357600-118358600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr9:118357800-118358600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr9:118357800-118359000	Enhancers	Adipose Nuclei	Adipose

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