Variant report

Variant	rs60171201
Chromosome Location	chr9:118569921-118569922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs55876715	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55914176	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55925310	1.00[AMR][1000 genomes]
rs56102162	1.00[AMR][1000 genomes]
rs56359809	1.00[AMR][1000 genomes]
rs57469122	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58188081	1.00[AMR][1000 genomes]
rs58999847	1.00[AMR][1000 genomes]
rs59445383	1.00[AMR][1000 genomes]
rs59578956	1.00[AMR][1000 genomes]
rs60193688	1.00[AMR][1000 genomes]
rs60240402	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61017330	1.00[AMR][1000 genomes]
rs61345813	1.00[AMR][1000 genomes]
rs73654588	1.00[AMR][1000 genomes]
rs73654589	1.00[AMR][1000 genomes]
rs73654602	1.00[AMR][1000 genomes]
rs73656506	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656507	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656508	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656510	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656511	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656548	1.00[AMR][1000 genomes]
rs73656549	1.00[AMR][1000 genomes]
rs73656550	1.00[AMR][1000 genomes]
rs73656551	1.00[AMR][1000 genomes]
rs73656552	1.00[AMR][1000 genomes]
rs73656575	1.00[AMR][1000 genomes]
rs73656597	1.00[AMR][1000 genomes]
rs73656598	1.00[AMR][1000 genomes]
rs73656771	1.00[AMR][1000 genomes]
rs73656772	1.00[AMR][1000 genomes]
rs73656775	1.00[AMR][1000 genomes]
rs73656776	1.00[AMR][1000 genomes]
rs73656777	1.00[AMR][1000 genomes]
rs73656779	1.00[AMR][1000 genomes]
rs73656780	1.00[AMR][1000 genomes]
rs73656781	1.00[AMR][1000 genomes]
rs73656784	1.00[AMR][1000 genomes]
rs73656785	1.00[AMR][1000 genomes]
rs7850382	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv916622	chr9:118206309-118952390	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv540207	chr9:118206311-118920304	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv491661	chr9:118206312-118802177	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	esv2761553	chr9:118454942-118598371	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1047761	chr9:118455827-118598371	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv831699	chr9:118457011-118641819	Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv518670	chr9:118461823-118597837	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv3483225	chr9:118562267-118574938	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
11	esv3483226	chr9:118562267-118574938	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv20001	chr9:118562519-118574831	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
13	nsv818719	chr9:118567019-118571428	Flanking Active TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118566800-118585800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:118567000-118586200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr9:118569800-118571200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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