Variant report

Variant	rs60193688
Chromosome Location	chr9:118381667-118381668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs55876715	1.00[AMR][1000 genomes]
rs55914176	1.00[AMR][1000 genomes]
rs55925310	1.00[AMR][1000 genomes]
rs56102162	1.00[AMR][1000 genomes]
rs56359809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57469122	1.00[AMR][1000 genomes]
rs58188081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58999847	1.00[AMR][1000 genomes]
rs59578956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60171201	1.00[AMR][1000 genomes]
rs60240402	1.00[AMR][1000 genomes]
rs61017330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61345813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73654588	1.00[AMR][1000 genomes]
rs73654589	1.00[AMR][1000 genomes]
rs73654602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656506	1.00[AMR][1000 genomes]
rs73656507	1.00[AMR][1000 genomes]
rs73656508	1.00[AMR][1000 genomes]
rs73656510	1.00[AMR][1000 genomes]
rs73656511	1.00[AMR][1000 genomes]
rs73656545	1.00[AMR][1000 genomes]
rs73656546	1.00[AMR][1000 genomes]
rs73656547	1.00[AMR][1000 genomes]
rs73656548	1.00[AMR][1000 genomes]
rs73656549	1.00[AMR][1000 genomes]
rs73656550	1.00[AMR][1000 genomes]
rs73656551	1.00[AMR][1000 genomes]
rs73656552	1.00[AMR][1000 genomes]
rs73656766	1.00[AMR][1000 genomes]
rs73656767	1.00[AMR][1000 genomes]
rs73656768	1.00[AMR][1000 genomes]
rs73656770	1.00[AMR][1000 genomes]
rs73656771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656775	1.00[AMR][1000 genomes]
rs73656776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656780	1.00[AMR][1000 genomes]
rs73656781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656785	1.00[AMR][1000 genomes]
rs7850382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv916622	chr9:118206309-118952390	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv540207	chr9:118206311-118920304	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv491661	chr9:118206312-118802177	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv831698	chr9:118284259-118446456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1047164	chr9:118286742-118456851	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118378200-118383600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:118379000-118382600	Weak transcription	HSMM	muscle
3	chr9:118379800-118390000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:118379800-118390200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:118380000-118387800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:118381000-118381800	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links