Variant report

Variant	rs73656583
Chromosome Location	chr9:98651741-98651742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98636399..98639007-chr9:98649744..98652920,3	MCF-7	breast:
2	chr9:98636333..98639771-chr9:98650158..98652405,3	MCF-7	breast:
3	chr9:98649831..98652525-chr9:98854810..98856755,2	MCF-7	breast:
4	chr9:98642876..98646721-chr9:98647995..98651810,4	K562	blood:

Variant related genes	Relation type
ENSG00000175611	Chromatin interaction
ENSG00000182150	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55747426	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56002461	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656558	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656566	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7859542	1.00[AMR][1000 genomes]
rs7874318	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482884	chr9:98530027-98691937	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
3	nsv893600	chr9:98608989-98775459	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98638800-98654800	Weak transcription	Esophagus	oesophagus
2	chr9:98638800-98702200	Weak transcription	Pancreas	Pancrea
3	chr9:98639400-98677800	Weak transcription	Placenta	Placenta
4	chr9:98639400-98678000	Weak transcription	Ovary	ovary
5	chr9:98639600-98678000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:98639800-98664200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr9:98639800-98677800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:98640000-98661600	Weak transcription	Right Atrium	heart
9	chr9:98640000-98663600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:98640000-98678200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:98640000-98680600	Weak transcription	Colonic Mucosa	Colon
12	chr9:98640000-98685600	Weak transcription	Right Ventricle	heart
13	chr9:98640000-98718600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr9:98640200-98678200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:98640400-98664800	Weak transcription	Brain Substantia Nigra	brain
16	chr9:98640400-98677800	Weak transcription	Psoas Muscle	Psoas
17	chr9:98640600-98678000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr9:98642200-98652400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr9:98642200-98654600	Weak transcription	Fetal Intestine Small	intestine
20	chr9:98642200-98663600	Weak transcription	Hela-S3	cervix
21	chr9:98642600-98678000	Weak transcription	Colon Smooth Muscle	Colon
22	chr9:98642600-98680600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr9:98642800-98668200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:98642800-98681800	Weak transcription	Fetal Kidney	kidney
25	chr9:98644200-98670600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr9:98644400-98678400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr9:98644400-98685600	Weak transcription	Gastric	stomach
28	chr9:98644600-98670200	Weak transcription	Left Ventricle	heart
29	chr9:98644600-98678000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr9:98644600-98690800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr9:98644800-98677400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr9:98645000-98662400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:98645600-98684200	Weak transcription	Brain Hippocampus Middle	brain
34	chr9:98645800-98652400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr9:98645800-98653800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:98645800-98654800	Weak transcription	Primary B cells from peripheral blood	blood
37	chr9:98645800-98670400	Weak transcription	Brain Germinal Matrix	brain
38	chr9:98645800-98672600	Weak transcription	HUVEC	blood vessel
39	chr9:98645800-98678400	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr9:98645800-98702200	Weak transcription	Aorta	Aorta
41	chr9:98646000-98680200	Weak transcription	K562	blood
42	chr9:98646400-98663800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr9:98646600-98652800	Weak transcription	NHEK	skin
44	chr9:98646600-98667800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr9:98646600-98670000	Weak transcription	Adipose Nuclei	Adipose
46	chr9:98646600-98681800	Weak transcription	HSMMtube	muscle
47	chr9:98646800-98655000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr9:98646800-98672400	Weak transcription	NHDF-Ad	bronchial
49	chr9:98647200-98653600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr9:98647200-98653800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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