Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98603000..98605899-chr9:98606221..98608449,2	MCF-7	breast:
2	chr9:98602627..98604199-chr9:98606124..98609102,2	K562	blood:

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55747426	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56002461	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656558	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656566	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656583	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7859542	0.91[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv482884	chr9:98530027-98691937	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98594000-98611000	Weak transcription	Colonic Mucosa	Colon
2	chr9:98594400-98610000	Weak transcription	Fetal Stomach	stomach
3	chr9:98594600-98610000	Weak transcription	Fetal Intestine Small	intestine
4	chr9:98596200-98616400	Weak transcription	Fetal Brain Female	brain
5	chr9:98596200-98619200	Weak transcription	Fetal Heart	heart
6	chr9:98596400-98619400	Weak transcription	Right Ventricle	heart
7	chr9:98599200-98614400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:98602000-98632800	Weak transcription	Left Ventricle	heart
9	chr9:98602000-98636000	Weak transcription	Lung	lung
10	chr9:98602400-98619400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr9:98602600-98618800	Weak transcription	Fetal Muscle Leg	muscle
12	chr9:98602600-98619400	Weak transcription	Psoas Muscle	Psoas
13	chr9:98602600-98620200	Weak transcription	Small Intestine	intestine
14	chr9:98602800-98607800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:98602800-98614400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:98602800-98619000	Weak transcription	Ovary	ovary
17	chr9:98603000-98610200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr9:98603200-98607800	Weak transcription	Fetal Lung	lung
19	chr9:98603200-98611200	Weak transcription	Liver	Liver
20	chr9:98604400-98621200	Weak transcription	Primary T cells from cord blood	blood
21	chr9:98607000-98610000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search: