Variant report

Variant	rs73678248
Chromosome Location	chr8:49110408-49110409
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs34485305	1.00[AMR][1000 genomes]
rs55770570	1.00[AMR][1000 genomes]
rs55997545	1.00[AMR][1000 genomes]
rs57059132	1.00[AMR][1000 genomes]
rs57774160	1.00[AMR][1000 genomes]
rs73678247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678249	1.00[AFR][1000 genomes]
rs73678257	1.00[AMR][1000 genomes]
rs73678258	1.00[AMR][1000 genomes]
rs73678260	1.00[AMR][1000 genomes]
rs73678261	1.00[AMR][1000 genomes]
rs73678272	1.00[AMR][1000 genomes]
rs73678273	1.00[AMR][1000 genomes]
rs7822677	1.00[AMR][1000 genomes]
rs7832673	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831310	chr8:49080177-49256440	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1841988	chr8:49093467-49156411	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv831311	chr8:49106160-49290209	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49104200-49115400	Weak transcription	Adipose Nuclei	Adipose
2	chr8:49105200-49111000	Weak transcription	Fetal Muscle Leg	muscle
3	chr8:49106600-49111000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:49110000-49110600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:49110000-49114000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr8:49110200-49111000	Enhancers	Spleen	Spleen
7	chr8:49110200-49111200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:49110400-49110600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:49110400-49111400	Enhancers	Left Ventricle	heart
10	chr8:49110400-49112000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:49110400-49113200	Enhancers	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links