Variant report

Variant	rs73678272
Chromosome Location	chr8:49254896-49254897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16935762	1.00[AFR][1000 genomes]
rs16935785	0.82[AFR][1000 genomes]
rs34485305	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4584166	0.85[AFR][1000 genomes]
rs55664150	1.00[AFR][1000 genomes]
rs55770570	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55997545	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56172225	1.00[AFR][1000 genomes]
rs57059132	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57774160	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58676807	1.00[AFR][1000 genomes]
rs73678247	1.00[AMR][1000 genomes]
rs73678248	1.00[AMR][1000 genomes]
rs73678257	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678258	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678260	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678261	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678262	0.85[AFR][1000 genomes]
rs73678265	1.00[AFR][1000 genomes]
rs73678267	1.00[AFR][1000 genomes]
rs73678268	0.87[AFR][1000 genomes]
rs73678273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678276	1.00[AFR][1000 genomes]
rs7822677	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7828670	1.00[AFR][1000 genomes]
rs7832673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831310	chr8:49080177-49256440	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831311	chr8:49106160-49290209	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49254400-49255400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:49254400-49255400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr8:49254400-49255600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:49254400-49255600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr8:49254800-49255400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr8:49254800-49255400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:49254800-49255600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr8:49254800-49255600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr8:49254800-49255800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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