Variant report

Variant	rs55664150
Chromosome Location	chr8:49227780-49227781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49227294..49228250-chr8:49837799..49838312,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16935762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16935785	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16937140	1.00[AMR][1000 genomes]
rs34485305	0.87[AFR][1000 genomes]
rs4584166	0.85[AFR][1000 genomes]
rs55770570	0.87[AFR][1000 genomes]
rs55997545	0.85[AFR][1000 genomes]
rs56172225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57059132	0.85[AFR][1000 genomes]
rs57774160	0.85[AFR][1000 genomes]
rs58676807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678257	0.85[AFR][1000 genomes]
rs73678258	0.85[AFR][1000 genomes]
rs73678260	0.85[AFR][1000 genomes]
rs73678261	0.85[AFR][1000 genomes]
rs73678262	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678268	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678272	1.00[AFR][1000 genomes]
rs73678273	1.00[AFR][1000 genomes]
rs73678276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819699	1.00[AMR][1000 genomes]
rs7822677	0.85[AFR][1000 genomes]
rs7828670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7832673	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831310	chr8:49080177-49256440	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831311	chr8:49106160-49290209	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1018242	chr8:49190915-49243694	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv539600	chr8:49190915-49243694	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49218200-49228600	Weak transcription	Esophagus	oesophagus
2	chr8:49219200-49228000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:49222400-49227800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:49222400-49231400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:49224400-49231000	Weak transcription	Ovary	ovary
6	chr8:49225800-49231400	Enhancers	Fetal Stomach	stomach
7	chr8:49226400-49228200	Enhancers	Fetal Lung	lung
8	chr8:49226600-49227800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:49226600-49231000	Weak transcription	Gastric	stomach
10	chr8:49226600-49231400	Weak transcription	Fetal Kidney	kidney
11	chr8:49226600-49231600	Weak transcription	Pancreas	Pancrea
12	chr8:49227000-49227800	Enhancers	Fetal Muscle Leg	muscle
13	chr8:49227000-49228000	Enhancers	Fetal Muscle Trunk	muscle
14	chr8:49227000-49231200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:49227200-49228200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:49227200-49228200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr8:49227200-49231400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:49227400-49227800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:49227400-49228000	Enhancers	Placenta	Placenta
20	chr8:49227400-49229400	Enhancers	NHEK	skin
21	chr8:49227400-49231000	Enhancers	NHDF-Ad	bronchial
22	chr8:49227400-49231200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr8:49227400-49231200	Enhancers	NHLF	lung
24	chr8:49227400-49231400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:49227600-49227800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr8:49227600-49228200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr8:49227600-49228600	Weak transcription	HSMM	muscle
28	chr8:49227600-49228800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:49227600-49228800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr8:49227600-49228800	Weak transcription	NH-A	brain
31	chr8:49227600-49229400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr8:49227600-49231000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr8:49227600-49231200	Enhancers	HMEC	breast

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