Variant report

Variant	rs34485305
Chromosome Location	chr8:49243182-49243183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16935762	0.87[AFR][1000 genomes]
rs55664150	0.87[AFR][1000 genomes]
rs55770570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55997545	1.00[AMR][1000 genomes]
rs56172225	0.87[AFR][1000 genomes]
rs57059132	1.00[AMR][1000 genomes]
rs57774160	1.00[AMR][1000 genomes]
rs58676807	0.87[AFR][1000 genomes]
rs73678247	1.00[AMR][1000 genomes]
rs73678248	1.00[AMR][1000 genomes]
rs73678257	1.00[AMR][1000 genomes]
rs73678258	1.00[AMR][1000 genomes]
rs73678260	1.00[AMR][1000 genomes]
rs73678261	1.00[AMR][1000 genomes]
rs73678265	0.87[AFR][1000 genomes]
rs73678267	0.87[AFR][1000 genomes]
rs73678268	1.00[AFR][1000 genomes]
rs73678272	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678273	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678276	0.87[AFR][1000 genomes]
rs7822677	1.00[AMR][1000 genomes]
rs7828670	0.87[AFR][1000 genomes]
rs7832673	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831310	chr8:49080177-49256440	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831311	chr8:49106160-49290209	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1018242	chr8:49190915-49243694	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv539600	chr8:49190915-49243694	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49243000-49243200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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