Variant report

Variant	rs73686041
Chromosome Location	chr8:78921316-78921317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55773633	1.00[AMR][1000 genomes]
rs55921636	1.00[AMR][1000 genomes]
rs61554691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73686044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73686089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73686092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73686972	1.00[AMR][1000 genomes]
rs73692515	1.00[AMR][1000 genomes]
rs73695014	1.00[AMR][1000 genomes]
rs73695023	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752267	chr8:78661586-78995994	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1034645	chr8:78782998-78996230	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv891054	chr8:78785042-78935739	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78916200-78922000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:78920400-78924400	Enhancers	Colon Smooth Muscle	Colon
3	chr8:78920800-78923000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:78920800-78923200	Enhancers	Rectal Smooth Muscle	rectum
5	chr8:78921000-78922200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:78921000-78922200	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr8:78921000-78922400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:78921000-78922400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:78921000-78922400	Enhancers	Stomach Smooth Muscle	stomach
10	chr8:78921000-78923000	Enhancers	Fetal Brain Male	brain
11	chr8:78921000-78923800	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr8:78921000-78923800	Enhancers	Fetal Muscle Leg	muscle
13	chr8:78921000-78924200	Enhancers	Fetal Stomach	stomach
14	chr8:78921000-78924600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr8:78921200-78921400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:78921200-78921600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr8:78921200-78922000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr8:78921200-78923800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr8:78921200-78923800	Enhancers	Brain Germinal Matrix	brain
20	chr8:78921200-78924000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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