Variant report
| Variant | rs73695023 |
|---|---|
| Chromosome Location | chr8:78816256-78816257 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:78768514..78770860-chr8:78814182..78816443,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs55773633 | 1.00[AMR][1000 genomes] |
| rs55921636 | 1.00[AMR][1000 genomes] |
| rs61554691 | 1.00[AMR][1000 genomes] |
| rs73686041 | 1.00[AMR][1000 genomes] |
| rs73686044 | 1.00[AMR][1000 genomes] |
| rs73686089 | 1.00[AMR][1000 genomes] |
| rs73686092 | 1.00[AMR][1000 genomes] |
| rs73686972 | 1.00[AMR][1000 genomes] |
| rs73692515 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73695014 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021008 | chr8:78540652-78902770 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv539651 | chr8:78540652-78902770 | Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv2752267 | chr8:78661586-78995994 | Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv525111 | chr8:78749262-78827617 | Flanking Active TSS Enhancers Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv1034645 | chr8:78782998-78996230 | Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv891054 | chr8:78785042-78935739 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:78813000-78816600 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
