Variant report

Variant	rs73686044
Chromosome Location	chr8:78923525-78923526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55773633	1.00[AMR][1000 genomes]
rs55921636	1.00[AMR][1000 genomes]
rs61554691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73686041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73686089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73686092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73686972	1.00[AMR][1000 genomes]
rs73692515	1.00[AMR][1000 genomes]
rs73695014	1.00[AMR][1000 genomes]
rs73695023	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752267	chr8:78661586-78995994	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1034645	chr8:78782998-78996230	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv891054	chr8:78785042-78935739	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78920400-78924400	Enhancers	Colon Smooth Muscle	Colon
2	chr8:78921000-78923800	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr8:78921000-78923800	Enhancers	Fetal Muscle Leg	muscle
4	chr8:78921000-78924200	Enhancers	Fetal Stomach	stomach
5	chr8:78921000-78924600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:78921200-78923800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:78921200-78923800	Enhancers	Brain Germinal Matrix	brain
8	chr8:78921200-78924000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr8:78921800-78924400	Enhancers	Brain Hippocampus Middle	brain
10	chr8:78922000-78925200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:78922200-78923600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr8:78922200-78924000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr8:78922200-78924000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr8:78922200-78924800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:78922400-78923800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr8:78922400-78924000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr8:78922400-78924000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr8:78923000-78923600	Enhancers	Brain Angular Gyrus	brain
19	chr8:78923000-78924000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:78923200-78923600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr8:78923200-78923600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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