Variant report

Variant	rs73690448
Chromosome Location	chr7:41135320-41135321
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17171816	0.87[AFR][1000 genomes]
rs59706952	0.94[AFR][1000 genomes]
rs60147161	0.87[AFR][1000 genomes]
rs73690430	0.94[AFR][1000 genomes]
rs73690431	0.98[AFR][1000 genomes]
rs73690432	0.94[AFR][1000 genomes]
rs73690433	0.94[AFR][1000 genomes]
rs73690442	0.89[AFR][1000 genomes]
rs73690443	0.89[AFR][1000 genomes]
rs73690458	0.81[AFR][1000 genomes]
rs7778653	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41128800-41136000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:41129200-41175200	Weak transcription	Aorta	Aorta
3	chr7:41132400-41135600	Weak transcription	NH-A	brain
4	chr7:41132800-41136600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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