Variant report

Variant	rs73690443
Chromosome Location	chr7:41118926-41118927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs56030167	0.81[AFR][1000 genomes]
rs57531749	0.86[AFR][1000 genomes]
rs57672285	0.86[AFR][1000 genomes]
rs59548170	0.86[AFR][1000 genomes]
rs59706952	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60147161	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60949997	0.82[AFR][1000 genomes]
rs61621605	0.86[AFR][1000 genomes]
rs6975140	0.86[AFR][1000 genomes]
rs73687904	0.80[AFR][1000 genomes]
rs73687905	0.82[AFR][1000 genomes]
rs73687907	0.82[AFR][1000 genomes]
rs73687908	0.82[AFR][1000 genomes]
rs73687909	0.82[AFR][1000 genomes]
rs73687910	0.82[AFR][1000 genomes]
rs73687911	0.82[AFR][1000 genomes]
rs73687913	0.82[AFR][1000 genomes]
rs73687914	0.86[AFR][1000 genomes]
rs73687915	0.82[AFR][1000 genomes]
rs73687916	0.82[AFR][1000 genomes]
rs73687917	0.82[AFR][1000 genomes]
rs73687920	0.86[AFR][1000 genomes]
rs73687921	0.86[AFR][1000 genomes]
rs73687922	0.86[AFR][1000 genomes]
rs73687923	0.86[AFR][1000 genomes]
rs73687924	0.86[AFR][1000 genomes]
rs73687925	0.86[AFR][1000 genomes]
rs73687927	0.86[AFR][1000 genomes]
rs73687930	0.86[AFR][1000 genomes]
rs73687931	0.86[AFR][1000 genomes]
rs73690430	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73690431	0.87[AFR][1000 genomes]
rs73690432	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73690433	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73690442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73690448	0.89[AFR][1000 genomes]
rs73690451	0.82[AFR][1000 genomes]
rs73690458	0.84[AFR][1000 genomes]
rs73690459	0.82[AFR][1000 genomes]
rs73690463	0.82[AFR][1000 genomes]
rs757906	0.81[AFR][1000 genomes]
rs7778653	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41112000-41127800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:41118200-41121000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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