Variant report

Variant	rs73687922
Chromosome Location	chr7:41182756-41182757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs55886409	1.00[AMR][1000 genomes]
rs55948804	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55982747	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56030167	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56059054	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56361180	0.88[AFR][1000 genomes]
rs56865647	1.00[AMR][1000 genomes]
rs57531749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57672285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58268206	1.00[AMR][1000 genomes]
rs58589699	1.00[AMR][1000 genomes]
rs59091698	1.00[AMR][1000 genomes]
rs59138481	1.00[AMR][1000 genomes]
rs59548170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59706952	0.81[AFR][1000 genomes]
rs59955258	1.00[AMR][1000 genomes]
rs60147161	0.84[AFR][1000 genomes]
rs60939619	1.00[AMR][1000 genomes]
rs60949997	0.88[AFR][1000 genomes]
rs61129066	1.00[AMR][1000 genomes]
rs61621605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6945673	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6964098	0.85[AFR][1000 genomes]
rs6974916	1.00[AMR][1000 genomes]
rs6975140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687904	0.90[AFR][1000 genomes]
rs73687905	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687907	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687908	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687909	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687910	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687911	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687913	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687915	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687916	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687917	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687934	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687937	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687938	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687939	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687940	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687941	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687942	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687954	1.00[AMR][1000 genomes]
rs73687955	1.00[AMR][1000 genomes]
rs73687958	1.00[AMR][1000 genomes]
rs73687959	1.00[AMR][1000 genomes]
rs73687960	1.00[AMR][1000 genomes]
rs73687961	1.00[AMR][1000 genomes]
rs73687962	1.00[AMR][1000 genomes]
rs73687963	1.00[AMR][1000 genomes]
rs73687968	1.00[AMR][1000 genomes]
rs73687969	1.00[AMR][1000 genomes]
rs73687970	1.00[AMR][1000 genomes]
rs73687972	1.00[AMR][1000 genomes]
rs73687979	1.00[AMR][1000 genomes]
rs73687980	1.00[AMR][1000 genomes]
rs73687983	1.00[AMR][1000 genomes]
rs73687984	1.00[AMR][1000 genomes]
rs73687986	1.00[AMR][1000 genomes]
rs73687987	1.00[AMR][1000 genomes]
rs73690430	0.81[AFR][1000 genomes]
rs73690432	0.81[AFR][1000 genomes]
rs73690433	0.81[AFR][1000 genomes]
rs73690442	0.86[AFR][1000 genomes]
rs73690443	0.86[AFR][1000 genomes]
rs73690451	0.88[AFR][1000 genomes]
rs73690458	0.90[AFR][1000 genomes]
rs73690459	0.88[AFR][1000 genomes]
rs73690462	0.85[AFR][1000 genomes]
rs73690463	0.92[AFR][1000 genomes]
rs757906	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7778653	0.81[AFR][1000 genomes]
rs7793245	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41174400-41187800	Weak transcription	NHLF	lung
2	chr7:41175800-41185600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:41182200-41183600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr7:41182200-41183800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:41182200-41183800	Enhancers	HMEC	breast
6	chr7:41182400-41183200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:41182600-41184000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:41182600-41185200	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links