Variant report

Variant	rs73690430
Chromosome Location	chr7:41114543-41114544
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41109428..41111588-chr7:41112880..41114571,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs17171816	0.82[AFR][1000 genomes]
rs57531749	0.81[AFR][1000 genomes]
rs57672285	0.81[AFR][1000 genomes]
rs59548170	0.81[AFR][1000 genomes]
rs59706952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60147161	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60949997	0.85[AFR][1000 genomes]
rs61621605	0.81[AFR][1000 genomes]
rs6964098	0.81[AFR][1000 genomes]
rs6975140	0.81[AFR][1000 genomes]
rs73687904	0.83[AFR][1000 genomes]
rs73687905	0.85[AFR][1000 genomes]
rs73687907	0.85[AFR][1000 genomes]
rs73687908	0.85[AFR][1000 genomes]
rs73687909	0.85[AFR][1000 genomes]
rs73687910	0.85[AFR][1000 genomes]
rs73687911	0.85[AFR][1000 genomes]
rs73687913	0.85[AFR][1000 genomes]
rs73687914	0.81[AFR][1000 genomes]
rs73687915	0.85[AFR][1000 genomes]
rs73687916	0.85[AFR][1000 genomes]
rs73687917	0.85[AFR][1000 genomes]
rs73687920	0.81[AFR][1000 genomes]
rs73687921	0.81[AFR][1000 genomes]
rs73687922	0.81[AFR][1000 genomes]
rs73687923	0.81[AFR][1000 genomes]
rs73687924	0.81[AFR][1000 genomes]
rs73687925	0.81[AFR][1000 genomes]
rs73687927	0.81[AFR][1000 genomes]
rs73687930	0.81[AFR][1000 genomes]
rs73687931	0.81[AFR][1000 genomes]
rs73690431	0.93[AFR][1000 genomes]
rs73690432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73690433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73690442	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73690443	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73690448	0.94[AFR][1000 genomes]
rs73690451	0.85[AFR][1000 genomes]
rs73690458	0.86[AFR][1000 genomes]
rs73690459	0.85[AFR][1000 genomes]
rs73690462	0.81[AFR][1000 genomes]
rs73690463	0.85[AFR][1000 genomes]
rs7778653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41101000-41117800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:41112000-41127800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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