Variant report

Variant	rs73690462
Chromosome Location	chr7:41160742-41160743
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs57531749	0.85[AFR][1000 genomes]
rs57672285	0.85[AFR][1000 genomes]
rs59548170	0.85[AFR][1000 genomes]
rs59706952	0.81[AFR][1000 genomes]
rs60949997	0.89[AFR][1000 genomes]
rs61621605	0.85[AFR][1000 genomes]
rs6964098	1.00[AFR][1000 genomes]
rs6975140	0.85[AFR][1000 genomes]
rs73687904	0.90[AFR][1000 genomes]
rs73687905	0.89[AFR][1000 genomes]
rs73687907	0.89[AFR][1000 genomes]
rs73687908	0.89[AFR][1000 genomes]
rs73687909	0.89[AFR][1000 genomes]
rs73687910	0.89[AFR][1000 genomes]
rs73687911	0.89[AFR][1000 genomes]
rs73687913	0.89[AFR][1000 genomes]
rs73687914	0.85[AFR][1000 genomes]
rs73687915	0.89[AFR][1000 genomes]
rs73687916	0.89[AFR][1000 genomes]
rs73687917	0.89[AFR][1000 genomes]
rs73687920	0.85[AFR][1000 genomes]
rs73687921	0.85[AFR][1000 genomes]
rs73687922	0.85[AFR][1000 genomes]
rs73687923	0.85[AFR][1000 genomes]
rs73687924	0.85[AFR][1000 genomes]
rs73687925	0.85[AFR][1000 genomes]
rs73687927	0.85[AFR][1000 genomes]
rs73687930	0.85[AFR][1000 genomes]
rs73687931	0.85[AFR][1000 genomes]
rs73687934	0.81[AFR][1000 genomes]
rs73690430	0.81[AFR][1000 genomes]
rs73690432	0.81[AFR][1000 genomes]
rs73690433	0.81[AFR][1000 genomes]
rs73690451	0.89[AFR][1000 genomes]
rs73690458	0.87[AFR][1000 genomes]
rs73690459	0.89[AFR][1000 genomes]
rs73690463	0.92[AFR][1000 genomes]
rs73690465	0.85[AFR][1000 genomes]
rs7778653	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv971563	chr7:41154738-41162366	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41129200-41175200	Weak transcription	Aorta	Aorta
2	chr7:41154800-41161600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:41158200-41160800	Weak transcription	NHEK	skin
4	chr7:41158400-41160800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:41158400-41160800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:41158400-41160800	Weak transcription	HMEC	breast
7	chr7:41158800-41161400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:41160600-41161000	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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