Variant report

Variant	rs73687909
Chromosome Location	chr7:41175744-41175745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs55886409	1.00[AMR][1000 genomes]
rs55948804	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55982747	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56030167	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56059054	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56361180	0.85[AFR][1000 genomes]
rs56865647	1.00[AMR][1000 genomes]
rs57531749	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57672285	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58268206	1.00[AMR][1000 genomes]
rs58589699	1.00[AMR][1000 genomes]
rs59091698	1.00[AMR][1000 genomes]
rs59138481	1.00[AMR][1000 genomes]
rs59548170	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59706952	0.85[AFR][1000 genomes]
rs59955258	1.00[AMR][1000 genomes]
rs60147161	0.80[AFR][1000 genomes]
rs60939619	1.00[AMR][1000 genomes]
rs60949997	0.92[AFR][1000 genomes]
rs61129066	1.00[AMR][1000 genomes]
rs61621605	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6945673	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6964098	0.89[AFR][1000 genomes]
rs6974916	1.00[AMR][1000 genomes]
rs6975140	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687904	0.94[AFR][1000 genomes]
rs73687905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687914	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687920	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687921	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687922	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687923	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687924	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687925	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687927	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687930	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687931	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687934	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687937	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687938	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687939	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687940	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687941	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687942	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687954	1.00[AMR][1000 genomes]
rs73687955	1.00[AMR][1000 genomes]
rs73687958	1.00[AMR][1000 genomes]
rs73687959	1.00[AMR][1000 genomes]
rs73687960	1.00[AMR][1000 genomes]
rs73687961	1.00[AMR][1000 genomes]
rs73687962	1.00[AMR][1000 genomes]
rs73687963	1.00[AMR][1000 genomes]
rs73687968	1.00[AMR][1000 genomes]
rs73687969	1.00[AMR][1000 genomes]
rs73687970	1.00[AMR][1000 genomes]
rs73687972	1.00[AMR][1000 genomes]
rs73687979	1.00[AMR][1000 genomes]
rs73687980	1.00[AMR][1000 genomes]
rs73687983	1.00[AMR][1000 genomes]
rs73687984	1.00[AMR][1000 genomes]
rs73687986	1.00[AMR][1000 genomes]
rs73687987	1.00[AMR][1000 genomes]
rs73690430	0.85[AFR][1000 genomes]
rs73690432	0.85[AFR][1000 genomes]
rs73690433	0.85[AFR][1000 genomes]
rs73690442	0.82[AFR][1000 genomes]
rs73690443	0.82[AFR][1000 genomes]
rs73690451	0.92[AFR][1000 genomes]
rs73690454	0.82[AFR][1000 genomes]
rs73690458	0.94[AFR][1000 genomes]
rs73690459	0.92[AFR][1000 genomes]
rs73690462	0.89[AFR][1000 genomes]
rs73690463	0.96[AFR][1000 genomes]
rs757906	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7778653	0.85[AFR][1000 genomes]
rs7793245	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41173400-41175800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr7:41174000-41177200	Weak transcription	Right Atrium	heart
3	chr7:41174400-41177200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:41174400-41187800	Weak transcription	NHLF	lung
5	chr7:41175200-41176200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:41175200-41176200	Enhancers	Esophagus	oesophagus
7	chr7:41175200-41176600	Strong transcription	Aorta	Aorta

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