Variant report

Variant	rs55886409
Chromosome Location	chr7:41311649-41311650
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs55948804	1.00[AMR][1000 genomes]
rs55982747	1.00[AMR][1000 genomes]
rs56030167	1.00[AMR][1000 genomes]
rs56059054	1.00[AMR][1000 genomes]
rs56865647	1.00[AMR][1000 genomes]
rs57531749	1.00[AMR][1000 genomes]
rs57672285	1.00[AMR][1000 genomes]
rs58268206	1.00[AMR][1000 genomes]
rs58589699	1.00[AMR][1000 genomes]
rs59091698	1.00[AMR][1000 genomes]
rs59138481	1.00[AMR][1000 genomes]
rs59548170	1.00[AMR][1000 genomes]
rs59955258	1.00[AMR][1000 genomes]
rs60939619	1.00[AMR][1000 genomes]
rs61129066	1.00[AMR][1000 genomes]
rs61621605	1.00[AMR][1000 genomes]
rs6945673	1.00[AMR][1000 genomes]
rs6974916	1.00[AMR][1000 genomes]
rs6975140	1.00[AMR][1000 genomes]
rs73687905	1.00[AMR][1000 genomes]
rs73687907	1.00[AMR][1000 genomes]
rs73687908	1.00[AMR][1000 genomes]
rs73687909	1.00[AMR][1000 genomes]
rs73687910	1.00[AMR][1000 genomes]
rs73687911	1.00[AMR][1000 genomes]
rs73687913	1.00[AMR][1000 genomes]
rs73687914	1.00[AMR][1000 genomes]
rs73687915	1.00[AMR][1000 genomes]
rs73687916	1.00[AMR][1000 genomes]
rs73687917	1.00[AMR][1000 genomes]
rs73687920	1.00[AMR][1000 genomes]
rs73687921	1.00[AMR][1000 genomes]
rs73687922	1.00[AMR][1000 genomes]
rs73687923	1.00[AMR][1000 genomes]
rs73687924	1.00[AMR][1000 genomes]
rs73687925	1.00[AMR][1000 genomes]
rs73687927	1.00[AMR][1000 genomes]
rs73687930	1.00[AMR][1000 genomes]
rs73687931	1.00[AMR][1000 genomes]
rs73687934	1.00[AMR][1000 genomes]
rs73687937	1.00[AMR][1000 genomes]
rs73687938	1.00[AMR][1000 genomes]
rs73687939	1.00[AMR][1000 genomes]
rs73687940	1.00[AMR][1000 genomes]
rs73687941	1.00[AMR][1000 genomes]
rs73687942	1.00[AMR][1000 genomes]
rs73687954	1.00[AMR][1000 genomes]
rs73687955	1.00[AMR][1000 genomes]
rs73687958	1.00[AMR][1000 genomes]
rs73687959	1.00[AMR][1000 genomes]
rs73687960	1.00[AMR][1000 genomes]
rs73687961	1.00[AMR][1000 genomes]
rs73687962	1.00[AMR][1000 genomes]
rs73687963	1.00[AMR][1000 genomes]
rs73687968	1.00[AMR][1000 genomes]
rs73687969	1.00[AMR][1000 genomes]
rs73687970	1.00[AMR][1000 genomes]
rs73687972	1.00[AMR][1000 genomes]
rs73687979	1.00[AMR][1000 genomes]
rs73687980	1.00[AMR][1000 genomes]
rs73687983	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687984	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687987	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs757906	1.00[AMR][1000 genomes]
rs7793245	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41296800-41343800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:41311400-41311800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:41311400-41311800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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