Variant report

Variant	rs73687970
Chromosome Location	chr7:41277400-41277401
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs55886409	1.00[AMR][1000 genomes]
rs55948804	1.00[AMR][1000 genomes]
rs55982747	1.00[AMR][1000 genomes]
rs56030167	1.00[AMR][1000 genomes]
rs56059054	1.00[AMR][1000 genomes]
rs56865647	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57531749	1.00[AMR][1000 genomes]
rs57672285	1.00[AMR][1000 genomes]
rs58268206	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58589699	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59091698	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59138481	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59548170	1.00[AMR][1000 genomes]
rs59955258	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60939619	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61129066	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61621605	1.00[AMR][1000 genomes]
rs6945673	1.00[AMR][1000 genomes]
rs6974916	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6975140	1.00[AMR][1000 genomes]
rs73687905	1.00[AMR][1000 genomes]
rs73687907	1.00[AMR][1000 genomes]
rs73687908	1.00[AMR][1000 genomes]
rs73687909	1.00[AMR][1000 genomes]
rs73687910	1.00[AMR][1000 genomes]
rs73687911	1.00[AMR][1000 genomes]
rs73687913	1.00[AMR][1000 genomes]
rs73687914	1.00[AMR][1000 genomes]
rs73687915	1.00[AMR][1000 genomes]
rs73687916	1.00[AMR][1000 genomes]
rs73687917	1.00[AMR][1000 genomes]
rs73687920	1.00[AMR][1000 genomes]
rs73687921	1.00[AMR][1000 genomes]
rs73687922	1.00[AMR][1000 genomes]
rs73687923	1.00[AMR][1000 genomes]
rs73687924	1.00[AMR][1000 genomes]
rs73687925	1.00[AMR][1000 genomes]
rs73687927	1.00[AMR][1000 genomes]
rs73687930	1.00[AMR][1000 genomes]
rs73687931	1.00[AMR][1000 genomes]
rs73687934	1.00[AMR][1000 genomes]
rs73687937	1.00[AMR][1000 genomes]
rs73687938	1.00[AMR][1000 genomes]
rs73687939	1.00[AMR][1000 genomes]
rs73687940	1.00[AMR][1000 genomes]
rs73687941	1.00[AMR][1000 genomes]
rs73687942	1.00[AMR][1000 genomes]
rs73687954	1.00[AMR][1000 genomes]
rs73687955	1.00[AMR][1000 genomes]
rs73687958	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687959	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687960	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687961	1.00[AMR][1000 genomes]
rs73687962	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687963	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687968	1.00[AMR][1000 genomes]
rs73687969	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687972	1.00[AMR][1000 genomes]
rs73687979	1.00[AMR][1000 genomes]
rs73687980	1.00[AMR][1000 genomes]
rs73687983	1.00[AMR][1000 genomes]
rs73687984	1.00[AMR][1000 genomes]
rs73687986	1.00[AMR][1000 genomes]
rs73687987	1.00[AMR][1000 genomes]
rs757906	1.00[AMR][1000 genomes]
rs7793245	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41259400-41278400	Weak transcription	HSMM	muscle
2	chr7:41265000-41296600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:41272200-41277800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:41272400-41277400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:41274600-41277400	Weak transcription	HMEC	breast
6	chr7:41274800-41277400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:41274800-41277400	Weak transcription	NHEK	skin
8	chr7:41275000-41277400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:41275000-41277400	Weak transcription	Osteobl	bone
10	chr7:41275800-41278600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr7:41277000-41278200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:41277200-41277600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:41277200-41279200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:41277200-41279200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:41277200-41279200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:41277200-41279400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:41277200-41279400	Enhancers	Hela-S3	cervix
18	chr7:41277200-41279400	Enhancers	NHDF-Ad	bronchial
19	chr7:41277400-41277600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:41277400-41279200	Enhancers	NHEK	skin
21	chr7:41277400-41279400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:41277400-41279600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr7:41277400-41279600	Enhancers	HMEC	breast
24	chr7:41277400-41279600	Enhancers	Osteobl	bone

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