Variant report

Variant	rs73690454
Chromosome Location	chr7:41143668-41143669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs60949997	0.85[AFR][1000 genomes]
rs73687904	0.83[AFR][1000 genomes]
rs73687905	0.82[AFR][1000 genomes]
rs73687907	0.82[AFR][1000 genomes]
rs73687908	0.82[AFR][1000 genomes]
rs73687909	0.82[AFR][1000 genomes]
rs73687910	0.82[AFR][1000 genomes]
rs73687911	0.82[AFR][1000 genomes]
rs73687913	0.82[AFR][1000 genomes]
rs73687915	0.82[AFR][1000 genomes]
rs73687916	0.82[AFR][1000 genomes]
rs73687917	0.82[AFR][1000 genomes]
rs73690451	0.89[AFR][1000 genomes]
rs73690458	0.83[AFR][1000 genomes]
rs73690459	0.85[AFR][1000 genomes]
rs73690463	0.85[AFR][1000 genomes]
rs73690465	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41129200-41175200	Weak transcription	Aorta	Aorta
2	chr7:41138400-41144000	Weak transcription	NHDF-Ad	bronchial
3	chr7:41138400-41144200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:41138600-41144200	Weak transcription	NH-A	brain
5	chr7:41142400-41144400	Enhancers	NHEK	skin
6	chr7:41142800-41143800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:41142800-41144800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:41143000-41144200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:41143000-41144800	Enhancers	HMEC	breast
10	chr7:41143200-41146200	Weak transcription	Hela-S3	cervix
11	chr7:41143400-41144400	Weak transcription	Osteobl	bone
12	chr7:41143400-41144800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:41143400-41147000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr7:41143600-41145000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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