Variant report

Variant	rs60949997
Chromosome Location	chr7:41146523-41146524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41094208..41096030-chr7:41145732..41147304,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs55948804	0.81[AFR][1000 genomes]
rs55982747	0.81[AFR][1000 genomes]
rs56030167	0.83[AFR][1000 genomes]
rs57531749	0.88[AFR][1000 genomes]
rs57672285	0.88[AFR][1000 genomes]
rs59548170	0.88[AFR][1000 genomes]
rs59706952	0.85[AFR][1000 genomes]
rs60147161	0.80[AFR][1000 genomes]
rs61621605	0.88[AFR][1000 genomes]
rs6945673	0.81[AFR][1000 genomes]
rs6964098	0.89[AFR][1000 genomes]
rs6975140	0.88[AFR][1000 genomes]
rs73687904	0.94[AFR][1000 genomes]
rs73687905	0.92[AFR][1000 genomes]
rs73687907	0.92[AFR][1000 genomes]
rs73687908	0.92[AFR][1000 genomes]
rs73687909	0.92[AFR][1000 genomes]
rs73687910	0.92[AFR][1000 genomes]
rs73687911	0.92[AFR][1000 genomes]
rs73687913	0.92[AFR][1000 genomes]
rs73687914	0.88[AFR][1000 genomes]
rs73687915	0.92[AFR][1000 genomes]
rs73687916	0.92[AFR][1000 genomes]
rs73687917	0.92[AFR][1000 genomes]
rs73687920	0.88[AFR][1000 genomes]
rs73687921	0.88[AFR][1000 genomes]
rs73687922	0.88[AFR][1000 genomes]
rs73687923	0.88[AFR][1000 genomes]
rs73687924	0.88[AFR][1000 genomes]
rs73687925	0.88[AFR][1000 genomes]
rs73687927	0.88[AFR][1000 genomes]
rs73687930	0.88[AFR][1000 genomes]
rs73687931	0.88[AFR][1000 genomes]
rs73687934	0.85[AFR][1000 genomes]
rs73687937	0.81[AFR][1000 genomes]
rs73687938	0.81[AFR][1000 genomes]
rs73687939	0.81[AFR][1000 genomes]
rs73687940	0.81[AFR][1000 genomes]
rs73687941	0.81[AFR][1000 genomes]
rs73687942	0.81[AFR][1000 genomes]
rs73690430	0.85[AFR][1000 genomes]
rs73690432	0.85[AFR][1000 genomes]
rs73690433	0.85[AFR][1000 genomes]
rs73690442	0.82[AFR][1000 genomes]
rs73690443	0.82[AFR][1000 genomes]
rs73690451	0.96[AFR][1000 genomes]
rs73690454	0.85[AFR][1000 genomes]
rs73690458	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73690459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73690462	0.89[AFR][1000 genomes]
rs73690463	0.96[AFR][1000 genomes]
rs757906	0.83[AFR][1000 genomes]
rs7778653	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41129200-41175200	Weak transcription	Aorta	Aorta
2	chr7:41143400-41147000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr7:41144800-41147000	Weak transcription	NH-A	brain
4	chr7:41144800-41147200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:41144800-41147200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:41145000-41147400	Weak transcription	Osteobl	bone
7	chr7:41145200-41146800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:41145600-41149600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:41146200-41147000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr7:41146200-41147000	Enhancers	Hela-S3	cervix
11	chr7:41146200-41147000	Enhancers	NHEK	skin
12	chr7:41146200-41147200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:41146200-41147400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:41146200-41147400	Enhancers	Esophagus	oesophagus
15	chr7:41146200-41147600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:41146200-41151000	Enhancers	HMEC	breast
17	chr7:41146400-41146600	Enhancers	NHDF-Ad	bronchial
18	chr7:41146400-41147000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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