Variant report

Variant	rs73691286
Chromosome Location	chr8:67003953-67003954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10216874	1.00[AMR][1000 genomes]
rs73691284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67001200-67004400	Weak transcription	HMEC	breast
2	chr8:67002600-67004600	Enhancers	Liver	Liver
3	chr8:67002600-67006400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:67002800-67004800	Enhancers	HepG2	liver
5	chr8:67003000-67004200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:67003600-67004600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr8:67003800-67004400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr8:67003800-67004600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links