Variant report

Variant	rs73691302
Chromosome Location	chr8:67028282-67028283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:67023862..67029462-chr8:67339600..67346087,12	MCF-7	breast:
2	chr8:67026046..67028476-chr8:67029113..67032451,3	MCF-7	breast:
3	chr8:66939552..66941809-chr8:67025937..67028911,2	K562	blood:
4	chr8:66987458..66989475-chr8:67026400..67028470,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000246145	Chromatin interaction
ENSG00000147576	Chromatin interaction
ENSG00000179041	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10216874	1.00[AMR][1000 genomes]
rs73691284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67026200-67032600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:67027000-67030600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr8:67027200-67028400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr8:67027200-67028400	Flanking Active TSS	A549	lung
5	chr8:67027200-67028800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr8:67027200-67029200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:67027200-67029800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr8:67027200-67030600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr8:67027200-67030600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr8:67027200-67030600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr8:67027200-67030600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr8:67027200-67030600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr8:67027200-67030800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr8:67027200-67031000	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr8:67027200-67031000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr8:67027200-67031400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr8:67027200-67031600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr8:67027200-67032200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:67027200-67032200	Weak transcription	Left Ventricle	heart
20	chr8:67027200-67035800	Weak transcription	Psoas Muscle	Psoas
21	chr8:67027200-67036200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr8:67027200-67036200	Weak transcription	Right Ventricle	heart
23	chr8:67027400-67031000	Weak transcription	HSMMtube	muscle
24	chr8:67027400-67032200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr8:67027400-67032600	Weak transcription	Hela-S3	cervix
26	chr8:67027400-67035600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:67027600-67028400	Enhancers	NHLF	lung
28	chr8:67027600-67029400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr8:67027600-67030600	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr8:67027600-67032400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr8:67027800-67032200	Weak transcription	NH-A	brain
32	chr8:67027800-67033800	Weak transcription	Fetal Muscle Leg	muscle
33	chr8:67027800-67036400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr8:67028000-67029000	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr8:67028000-67029400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr8:67028000-67030600	Weak transcription	Primary T cells from cord blood	blood
37	chr8:67028000-67030600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr8:67028000-67030600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr8:67028000-67030600	Weak transcription	HSMM	muscle
40	chr8:67028000-67030800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr8:67028000-67031000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr8:67028000-67031600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr8:67028000-67031800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr8:67028000-67031800	Weak transcription	NHEK	skin
45	chr8:67028000-67032000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr8:67028000-67032200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr8:67028000-67032400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr8:67028000-67032600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr8:67028000-67032600	Weak transcription	Placenta	Placenta
50	chr8:67028000-67032800	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links