Variant report
| Variant | rs73700881 |
|---|---|
| Chromosome Location | chr8:110426852-110426853 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:110401827..110406627-chr8:110422630..110427187,6 | K562 | blood: | |
| 2 | chr8:110425956..110428666-chr8:110434429..110437325,2 | K562 | blood: | |
| 3 | chr8:110420388..110423351-chr8:110425627..110427153,2 | MCF-7 | breast: | |
| 4 | chr8:110424209..110426858-chr8:110430949..110433063,2 | K562 | blood: | |
| 5 | chr8:110345232..110347508-chr8:110426047..110428464,2 | K562 | blood: | |
| 6 | chr8:110415571..110417491-chr8:110425418..110428260,2 | K562 | blood: | |
| 7 | chr8:110418593..110421354-chr8:110426725..110428421,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000120533 | Chromatin interaction |
| ENSG00000120526 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs57288963 | 1.00[AMR][1000 genomes] |
| rs58327018 | 1.00[AMR][1000 genomes] |
| rs60754015 | 1.00[AMR][1000 genomes] |
| rs60976515 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700861 | 0.84[AFR][1000 genomes] |
| rs73700862 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700864 | 1.00[AMR][1000 genomes] |
| rs73700874 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700878 | 1.00[AMR][1000 genomes] |
| rs73700887 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891273 | chr8:110219735-110475874 | Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv891279 | chr8:110268104-110450092 | Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv891280 | chr8:110346363-110465481 | Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 4 | esv1832336 | chr8:110397738-110437384 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv1018510 | chr8:110403496-110504029 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
