Variant report

Variant	rs73700862
Chromosome Location	chr8:110359869-110359870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110358764..110360570-chr8:110733520..110735088,2	MCF-7	breast:
2	chr8:110358079..110360287-chr8:110586276..110588279,2	K562	blood:
3	chr8:110357510..110359892-chr8:110365729..110367920,2	K562	blood:
4	chr8:110359113..110360008-chr8:110565132..110565748,2	MCF-7	breast:
5	chr8:110353436..110355204-chr8:110357328..110360216,4	K562	blood:
6	chr8:110359161..110361961-chr8:110559520..110561613,2	MCF-7	breast:
7	chr8:110356952..110358938-chr8:110359155..110360701,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs2168677	0.82[AFR][1000 genomes]
rs55786960	0.82[AFR][1000 genomes]
rs56162009	0.82[AFR][1000 genomes]
rs56224859	0.82[AFR][1000 genomes]
rs57288963	1.00[AMR][1000 genomes]
rs57909958	0.82[AFR][1000 genomes]
rs58327018	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60754015	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60976515	1.00[AMR][1000 genomes]
rs73700609	0.82[AFR][1000 genomes]
rs73700611	0.82[AFR][1000 genomes]
rs73700612	0.82[AFR][1000 genomes]
rs73700630	0.82[AFR][1000 genomes]
rs73700861	0.89[AFR][1000 genomes]
rs73700864	1.00[AMR][1000 genomes]
rs73700874	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700878	1.00[AMR][1000 genomes]
rs73700881	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700887	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700890	0.82[AFR][1000 genomes]
rs73700892	0.82[AFR][1000 genomes]
rs73700893	0.82[AFR][1000 genomes]
rs73704012	0.82[AFR][1000 genomes]
rs73704013	0.82[AFR][1000 genomes]
rs73704020	0.82[AFR][1000 genomes]
rs73704024	0.82[AFR][1000 genomes]
rs73704035	0.82[AFR][1000 genomes]
rs73704042	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv891279	chr8:110268104-110450092	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv891280	chr8:110346363-110465481	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110347400-110360000	Weak transcription	Stomach Mucosa	stomach
2	chr8:110348400-110360200	Weak transcription	Fetal Intestine Small	intestine
3	chr8:110348800-110364400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:110353000-110361600	Weak transcription	NHDF-Ad	bronchial
5	chr8:110356800-110360200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr8:110357000-110360200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr8:110357200-110360000	Weak transcription	Primary T cells from cord blood	blood
8	chr8:110357200-110360000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:110357200-110360200	Weak transcription	Fetal Heart	heart
10	chr8:110357200-110360600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:110357200-110360600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:110357200-110360600	Weak transcription	K562	blood
13	chr8:110357400-110360000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr8:110357400-110360000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:110357400-110360000	Weak transcription	Liver	Liver
16	chr8:110357400-110360200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr8:110357400-110360400	Weak transcription	Fetal Thymus	thymus
18	chr8:110357400-110360600	Weak transcription	Brain Hippocampus Middle	brain
19	chr8:110357400-110360800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr8:110357400-110360800	Weak transcription	Fetal Intestine Large	intestine
21	chr8:110357400-110360800	Weak transcription	Left Ventricle	heart
22	chr8:110357600-110361400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr8:110359400-110360000	Enhancers	Brain Substantia Nigra	brain
24	chr8:110359800-110360000	Enhancers	Gastric	stomach

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