Variant report

Variant	rs73709235
Chromosome Location	chr7:79445423-79445424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10953958	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973409	0.81[AFR][1000 genomes]
rs11979651	0.81[AFR][1000 genomes]
rs17152873	0.81[AFR][1000 genomes]
rs17152890	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56193718	0.81[AFR][1000 genomes]
rs59182614	0.81[AFR][1000 genomes]
rs59636427	0.81[AFR][1000 genomes]
rs60424657	1.00[AMR][1000 genomes]
rs61008265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6974552	0.87[AFR][1000 genomes]
rs73379253	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73379258	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73379261	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73379264	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73383025	0.81[AFR][1000 genomes]
rs73708111	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709239	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7793643	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2829876	chr7:79355196-79483480	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888521	chr7:79371206-79483480	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79443800-79445800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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