Variant report

Variant	rs10953958
Chromosome Location	chr7:79484202-79484203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12112402	0.81[AFR][1000 genomes]
rs17152890	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57325773	0.83[AFR][1000 genomes]
rs60424657	1.00[AMR][1000 genomes]
rs61008265	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6960240	0.83[AFR][1000 genomes]
rs6974552	0.96[AFR][1000 genomes]
rs73368650	0.83[AFR][1000 genomes]
rs73368654	0.81[AFR][1000 genomes]
rs73379253	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73379258	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73379261	1.00[AMR][1000 genomes]
rs73379264	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708111	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709235	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709239	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7779271	0.81[AFR][1000 genomes]
rs7793643	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7809579	0.83[AFR][1000 genomes]
rs980782	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv5808	chr7:79453632-79502455	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79484000-79484400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:79484000-79484600	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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