Variant report

Variant	rs6974552
Chromosome Location	chr7:79504113-79504114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10953958	0.96[AFR][1000 genomes]
rs11980955	0.81[AFR][1000 genomes]
rs11981168	0.81[AFR][1000 genomes]
rs12113366	0.81[AFR][1000 genomes]
rs17152890	0.85[AFR][1000 genomes]
rs1922732	0.81[AFR][1000 genomes]
rs1922733	0.81[AFR][1000 genomes]
rs2107410	0.81[AFR][1000 genomes]
rs58333083	0.81[AFR][1000 genomes]
rs61008265	0.87[AFR][1000 genomes]
rs6949571	0.81[AFR][1000 genomes]
rs6960240	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368661	0.81[AFR][1000 genomes]
rs73368662	0.81[AFR][1000 genomes]
rs73368680	0.81[AFR][1000 genomes]
rs73368686	0.81[AFR][1000 genomes]
rs73379253	0.81[AFR][1000 genomes]
rs73379258	0.81[AFR][1000 genomes]
rs73379264	0.81[AFR][1000 genomes]
rs73708111	0.81[AFR][1000 genomes]
rs73709235	0.87[AFR][1000 genomes]
rs73709239	0.82[AFR][1000 genomes]
rs7793643	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv607675	chr7:79495456-79519229	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79498200-79505600	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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