Variant report

Variant	rs6949571
Chromosome Location	chr7:79509286-79509287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11972803	0.80[AFR][1000 genomes]
rs11973409	0.85[AFR][1000 genomes]
rs11979651	0.89[AFR][1000 genomes]
rs11980955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981168	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12112402	0.93[AFR][1000 genomes]
rs12113366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152873	0.89[AFR][1000 genomes]
rs17152935	0.91[AFR][1000 genomes]
rs1922732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1922733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2023897	0.87[AFR][1000 genomes]
rs2023898	0.91[AFR][1000 genomes]
rs2107410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55894416	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56193718	0.89[AFR][1000 genomes]
rs56307600	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57325773	0.94[AFR][1000 genomes]
rs58333083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59182614	0.89[AFR][1000 genomes]
rs59636427	0.89[AFR][1000 genomes]
rs60300830	0.91[AFR][1000 genomes]
rs6946265	1.00[AMR][1000 genomes]
rs6974552	0.81[AFR][1000 genomes]
rs6976935	0.84[AFR][1000 genomes]
rs73368650	0.94[AFR][1000 genomes]
rs73368654	0.96[AFR][1000 genomes]
rs73368661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73370594	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73372520	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73372555	1.00[AMR][1000 genomes]
rs73372557	1.00[AMR][1000 genomes]
rs73383025	0.89[AFR][1000 genomes]
rs73383061	0.83[AFR][1000 genomes]
rs73705067	0.87[AFR][1000 genomes]
rs7779271	0.96[AFR][1000 genomes]
rs7806037	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806665	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7809579	0.94[AFR][1000 genomes]
rs980782	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv607675	chr7:79495456-79519229	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79509200-79509800	Enhancers	Pancreatic Islets	Pancreatic Islet

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