Variant report

Variant	rs2023897
Chromosome Location	chr7:79449578-79449579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11972803	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973409	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11977110	0.81[AFR][1000 genomes]
rs11979651	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11980955	0.87[AFR][1000 genomes]
rs11981168	0.87[AFR][1000 genomes]
rs12112402	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12113366	0.87[AFR][1000 genomes]
rs17152857	0.81[AFR][1000 genomes]
rs17152858	0.81[AFR][1000 genomes]
rs17152859	0.81[AFR][1000 genomes]
rs17152864	0.80[AFR][1000 genomes]
rs17152873	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152877	0.84[AFR][1000 genomes]
rs17152935	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1851752	0.81[AFR][1000 genomes]
rs1922732	0.87[AFR][1000 genomes]
rs1922733	0.87[AFR][1000 genomes]
rs2023898	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2107410	0.87[AFR][1000 genomes]
rs55772364	0.81[AFR][1000 genomes]
rs55894416	0.83[AFR][1000 genomes]
rs56193718	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56307600	0.83[AFR][1000 genomes]
rs56320258	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56351881	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56855945	0.84[AFR][1000 genomes]
rs57226669	0.81[AFR][1000 genomes]
rs57325773	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57942274	0.84[AFR][1000 genomes]
rs58192392	0.81[AFR][1000 genomes]
rs58333083	0.87[AFR][1000 genomes]
rs59182614	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59329952	0.81[AFR][1000 genomes]
rs59636427	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60300830	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60390345	0.81[AFR][1000 genomes]
rs6949571	0.87[AFR][1000 genomes]
rs6976935	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368650	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368654	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368661	0.87[AFR][1000 genomes]
rs73368662	0.87[AFR][1000 genomes]
rs73368680	0.87[AFR][1000 genomes]
rs73368686	0.87[AFR][1000 genomes]
rs73370594	0.83[AFR][1000 genomes]
rs73381225	0.81[AFR][1000 genomes]
rs73381226	0.81[AFR][1000 genomes]
rs73383025	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73383061	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73705067	0.92[AFR][1000 genomes]
rs7779271	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7789978	0.81[AFR][1000 genomes]
rs7806037	0.82[AFR][1000 genomes]
rs7806665	0.80[AFR][1000 genomes]
rs7809579	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs980782	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2829876	chr7:79355196-79483480	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888521	chr7:79371206-79483480	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3429432	chr7:79447566-79449864	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79445800-79449600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:79448400-79449600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr7:79449000-79449600	Enhancers	Fetal Lung	lung
4	chr7:79449400-79449600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:79449400-79449600	Enhancers	Fetal Brain Male	brain
6	chr7:79449400-79449600	Active TSS	NHLF	lung
7	chr7:79449400-79449600	Enhancers	Osteobl	bone
8	chr7:79449400-79449800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr7:79449400-79449800	Enhancers	NH-A	brain
10	chr7:79449400-79450000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:79449400-79450000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:79449400-79450200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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