Variant report

Variant	rs73383061
Chromosome Location	chr7:79458774-79458775
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11972803	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973409	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11979651	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11980955	0.83[AFR][1000 genomes]
rs11981168	0.83[AFR][1000 genomes]
rs12112402	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12113366	0.83[AFR][1000 genomes]
rs17152864	0.80[AFR][1000 genomes]
rs17152873	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152877	0.81[AFR][1000 genomes]
rs17152935	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1922732	0.83[AFR][1000 genomes]
rs1922733	0.83[AFR][1000 genomes]
rs2023897	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2023898	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2107410	0.83[AFR][1000 genomes]
rs56193718	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56320258	1.00[AMR][1000 genomes]
rs56351881	1.00[AMR][1000 genomes]
rs56855945	0.81[AFR][1000 genomes]
rs57325773	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57942274	0.81[AFR][1000 genomes]
rs58333083	0.83[AFR][1000 genomes]
rs59182614	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59636427	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60300830	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6949571	0.83[AFR][1000 genomes]
rs6976935	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368650	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368654	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368661	0.83[AFR][1000 genomes]
rs73368662	0.83[AFR][1000 genomes]
rs73368680	0.83[AFR][1000 genomes]
rs73368686	0.83[AFR][1000 genomes]
rs73383025	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73705067	0.89[AFR][1000 genomes]
rs7779271	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7809579	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs980782	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2829876	chr7:79355196-79483480	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888521	chr7:79371206-79483480	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv5808	chr7:79453632-79502455	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79457400-79458800	Enhancers	NHLF	lung

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