Variant report

Variant	rs17152877
Chromosome Location	chr7:79404957-79404958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11972803	0.81[AFR][1000 genomes]
rs11973409	0.86[AFR][1000 genomes]
rs11977110	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11979651	0.89[AFR][1000 genomes]
rs12112402	0.83[AFR][1000 genomes]
rs17152857	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152858	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152859	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152864	0.96[AFR][1000 genomes]
rs17152873	0.89[AFR][1000 genomes]
rs17152935	0.88[AFR][1000 genomes]
rs1851752	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2023897	0.84[AFR][1000 genomes]
rs2023898	0.88[AFR][1000 genomes]
rs55772364	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56193718	0.89[AFR][1000 genomes]
rs56320258	0.95[AFR][1000 genomes]
rs56351881	0.95[AFR][1000 genomes]
rs56855945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57226669	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57325773	0.84[AFR][1000 genomes]
rs57942274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58192392	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59182614	0.89[AFR][1000 genomes]
rs59329952	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59636427	0.89[AFR][1000 genomes]
rs60300830	0.88[AFR][1000 genomes]
rs60390345	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6976935	0.84[AFR][1000 genomes]
rs73368650	0.84[AFR][1000 genomes]
rs73368654	0.83[AFR][1000 genomes]
rs73381225	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73381226	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73383025	0.89[AFR][1000 genomes]
rs73383061	0.81[AFR][1000 genomes]
rs73705067	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7779271	0.83[AFR][1000 genomes]
rs7789978	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7809579	0.84[AFR][1000 genomes]
rs980782	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2758121	chr7:79261464-79427646	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759540	chr7:79261464-79427646	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv607670	chr7:79310586-79434743	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1016075	chr7:79316477-79404957	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1033114	chr7:79317818-79408713	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1018854	chr7:79320516-79404957	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1025266	chr7:79320516-79408713	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1023653	chr7:79320516-79410073	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv2829876	chr7:79355196-79483480	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv888521	chr7:79371206-79483480	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79399400-79411000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:79404800-79405800	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links