Variant report

Variant	rs57325773
Chromosome Location	chr7:79490611-79490612
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10953958	0.83[AFR][1000 genomes]
rs11972803	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973409	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11977110	0.81[AFR][1000 genomes]
rs11979651	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11980955	0.94[AFR][1000 genomes]
rs11981168	0.94[AFR][1000 genomes]
rs12112402	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12113366	0.94[AFR][1000 genomes]
rs17152857	0.81[AFR][1000 genomes]
rs17152858	0.81[AFR][1000 genomes]
rs17152859	0.81[AFR][1000 genomes]
rs17152864	0.80[AFR][1000 genomes]
rs17152873	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152877	0.84[AFR][1000 genomes]
rs17152935	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1851752	0.81[AFR][1000 genomes]
rs1922732	0.94[AFR][1000 genomes]
rs1922733	0.94[AFR][1000 genomes]
rs2023897	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2023898	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2107410	0.94[AFR][1000 genomes]
rs55772364	0.81[AFR][1000 genomes]
rs55894416	0.91[AFR][1000 genomes]
rs56193718	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56307600	0.91[AFR][1000 genomes]
rs56320258	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56351881	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56855945	0.84[AFR][1000 genomes]
rs57226669	0.81[AFR][1000 genomes]
rs57942274	0.84[AFR][1000 genomes]
rs58192392	0.81[AFR][1000 genomes]
rs58333083	0.94[AFR][1000 genomes]
rs59182614	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59329952	0.81[AFR][1000 genomes]
rs59636427	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60300830	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60390345	0.81[AFR][1000 genomes]
rs6949571	0.94[AFR][1000 genomes]
rs6976935	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368654	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368661	0.94[AFR][1000 genomes]
rs73368662	0.94[AFR][1000 genomes]
rs73368680	0.94[AFR][1000 genomes]
rs73368686	0.94[AFR][1000 genomes]
rs73370594	0.91[AFR][1000 genomes]
rs73372520	0.87[AFR][1000 genomes]
rs73381225	0.81[AFR][1000 genomes]
rs73381226	0.81[AFR][1000 genomes]
rs73383025	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73383061	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73705067	0.92[AFR][1000 genomes]
rs7779271	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7789978	0.81[AFR][1000 genomes]
rs7806037	0.89[AFR][1000 genomes]
rs7806665	0.87[AFR][1000 genomes]
rs7809579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs980782	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv5808	chr7:79453632-79502455	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79490600-79492000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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