Variant report

Variant	rs56307600
Chromosome Location	chr7:79562048-79562049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11973409	0.82[AFR][1000 genomes]
rs11979651	0.85[AFR][1000 genomes]
rs11980955	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981168	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12112402	0.89[AFR][1000 genomes]
rs12113366	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152873	0.85[AFR][1000 genomes]
rs17152935	0.87[AFR][1000 genomes]
rs1922732	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1922733	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2023897	0.83[AFR][1000 genomes]
rs2023898	0.87[AFR][1000 genomes]
rs2107410	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55894416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56193718	0.85[AFR][1000 genomes]
rs57325773	0.91[AFR][1000 genomes]
rs58333083	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59182614	0.85[AFR][1000 genomes]
rs59636427	0.85[AFR][1000 genomes]
rs60300830	0.87[AFR][1000 genomes]
rs6946265	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6949571	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6976935	0.80[AFR][1000 genomes]
rs73368650	0.91[AFR][1000 genomes]
rs73368654	0.89[AFR][1000 genomes]
rs73368661	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368662	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368680	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368686	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73370594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73372520	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73372555	1.00[AMR][1000 genomes]
rs73372557	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73383025	0.85[AFR][1000 genomes]
rs73705067	0.84[AFR][1000 genomes]
rs7779271	0.89[AFR][1000 genomes]
rs7806037	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806665	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7809579	0.91[AFR][1000 genomes]
rs980782	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032480	chr7:79558011-79625086	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79555200-79562800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr7:79558600-79566000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:79561600-79563200	Enhancers	Osteobl	bone
4	chr7:79562000-79563200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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