Variant report

Variant	rs73372555
Chromosome Location	chr7:79598371-79598372
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11980955	1.00[AMR][1000 genomes]
rs11981168	1.00[AMR][1000 genomes]
rs12113366	1.00[AMR][1000 genomes]
rs1922732	1.00[AMR][1000 genomes]
rs1922733	1.00[AMR][1000 genomes]
rs2107410	1.00[AMR][1000 genomes]
rs55894416	1.00[AMR][1000 genomes]
rs56307600	1.00[AMR][1000 genomes]
rs58333083	1.00[AMR][1000 genomes]
rs6946265	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6949571	1.00[AMR][1000 genomes]
rs73368661	1.00[AMR][1000 genomes]
rs73368662	1.00[AMR][1000 genomes]
rs73368680	1.00[AMR][1000 genomes]
rs73368686	1.00[AMR][1000 genomes]
rs73370594	1.00[AMR][1000 genomes]
rs73372520	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73372557	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806037	1.00[AMR][1000 genomes]
rs7806665	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032480	chr7:79558011-79625086	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79597200-79598400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr7:79597600-79598400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:79597800-79598800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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