Variant report

Variant	rs6946265
Chromosome Location	chr7:79599321-79599322
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11980955	1.00[AMR][1000 genomes]
rs11981168	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12113366	1.00[AMR][1000 genomes]
rs1922732	1.00[AMR][1000 genomes]
rs1922733	1.00[AMR][1000 genomes]
rs2107410	1.00[AMR][1000 genomes]
rs55894416	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56307600	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58333083	1.00[AMR][1000 genomes]
rs6949571	1.00[AMR][1000 genomes]
rs6960240	0.84[AFR][1000 genomes]
rs73368661	1.00[AMR][1000 genomes]
rs73368662	1.00[AMR][1000 genomes]
rs73368680	1.00[AMR][1000 genomes]
rs73368686	1.00[AMR][1000 genomes]
rs73370594	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73372520	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73372555	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73372557	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806037	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806665	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032480	chr7:79558011-79625086	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79598800-79600600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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