Variant report

Variant	rs73715416
Chromosome Location	chr7:111725626-111725627
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:111719879..111722087-chr7:111722721..111725922,3	MCF-7	breast:
2	chr7:111725319..111725839-chr7:111784610..111785137,2	MCF-7	breast:
3	chr7:111724807..111725877-chr7:111784018..111785083,11	MCF-7	breast:
4	chr7:111724807..111725873-chr7:111784185..111785009,6	MCF-7	breast:
5	chr7:111724902..111725864-chr7:111800272..111801112,3	MCF-7	breast:
6	chr7:111725018..111725680-chr7:111800661..111801209,2	MCF-7	breast:
7	chr7:111711136..111713687-chr7:111723265..111726073,2	MCF-7	breast:
8	chr7:111724914..111725707-chr7:111777452..111778442,2	MCF-7	breast:
9	chr7:111635442..111637426-chr7:111724707..111726732,2	MCF-7	breast:

No data

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55935391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56237403	1.00[AMR][1000 genomes]
rs57297756	1.00[AMR][1000 genomes]
rs61662262	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73715410	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73715412	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73715413	0.91[AFR][1000 genomes]
rs73715414	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73715415	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73715420	0.92[AFR][1000 genomes]
rs73715422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73715431	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73715472	1.00[AMR][1000 genomes]
rs73715473	1.00[AMR][1000 genomes]
rs73715474	1.00[AMR][1000 genomes]
rs73715492	1.00[AMR][1000 genomes]
rs73715502	1.00[AMR][1000 genomes]
rs73717512	1.00[AMR][1000 genomes]
rs73717948	1.00[AMR][1000 genomes]
rs73717949	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717950	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717953	1.00[AMR][1000 genomes]
rs73717954	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7784460	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608196	chr7:111073710-111794368	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1021527	chr7:111194596-111851619	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv539086	chr7:111194596-111851619	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv531435	chr7:111333900-111926292	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv533924	chr7:111529515-111784369	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv1023261	chr7:111593889-111780337	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	nsv1016663	chr7:111622107-111813223	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv1034249	chr7:111656902-111748774	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv539089	chr7:111656902-111748774	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv889054	chr7:111666943-111739842	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111713200-111742400	Weak transcription	Right Ventricle	heart
2	chr7:111715200-111726600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:111719800-111727800	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:111720600-111753200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:111721400-111728800	Weak transcription	Fetal Kidney	kidney
6	chr7:111721400-111737800	Weak transcription	NHEK	skin
7	chr7:111721400-111743600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:111721600-111732600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:111721600-111736800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:111722000-111729800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr7:111722200-111734800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:111722200-111736800	Weak transcription	Left Ventricle	heart
13	chr7:111722200-111736800	Weak transcription	Lung	lung
14	chr7:111722600-111725800	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr7:111722600-111726600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr7:111723400-111726000	Enhancers	Liver	Liver
17	chr7:111723600-111727200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:111723800-111725800	Enhancers	Adipose Nuclei	Adipose
19	chr7:111723800-111725800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:111723800-111728200	Enhancers	HUVEC	blood vessel
21	chr7:111723800-111728400	Enhancers	Brain Substantia Nigra	brain
22	chr7:111724000-111726200	Enhancers	HepG2	liver
23	chr7:111724000-111727400	Enhancers	Fetal Lung	lung
24	chr7:111724200-111726800	Weak transcription	Psoas Muscle	Psoas
25	chr7:111724400-111725800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:111724600-111727800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr7:111724600-111746200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr7:111724800-111729800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr7:111725000-111725800	Weak transcription	Ovary	ovary
30	chr7:111725000-111726000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr7:111725000-111726400	Enhancers	A549	lung
32	chr7:111725000-111727800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr7:111725000-111729800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr7:111725000-111731400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr7:111725000-111733000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr7:111725000-111737000	Weak transcription	Right Atrium	heart
37	chr7:111725200-111726800	Weak transcription	Aorta	Aorta
38	chr7:111725200-111727000	Enhancers	Brain Cingulate Gyrus	brain
39	chr7:111725200-111727000	Enhancers	Osteobl	bone
40	chr7:111725200-111727200	Enhancers	Muscle Satellite Cultured Cells	--
41	chr7:111725200-111728200	Enhancers	Brain Hippocampus Middle	brain
42	chr7:111725200-111730200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr7:111725200-111736600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr7:111725200-111743000	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr7:111725400-111725800	Weak transcription	Brain Anterior Caudate	brain
46	chr7:111725400-111725800	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr7:111725400-111726600	Weak transcription	Brain Angular Gyrus	brain
48	chr7:111725400-111727200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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