Variant report

Variant	rs73715431
Chromosome Location	chr7:111732563-111732564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:111727544..111730183-chr7:111730698..111732624,2	MCF-7	breast:
2	chr7:111725644..111728326-chr7:111730288..111732992,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55935391	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56237403	1.00[AMR][1000 genomes]
rs57297756	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61662262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73715410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73715412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73715413	1.00[AFR][1000 genomes]
rs73715414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73715415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73715416	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73715420	0.84[AFR][1000 genomes]
rs73715422	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73715472	1.00[AMR][1000 genomes]
rs73715473	1.00[AMR][1000 genomes]
rs73715474	1.00[AMR][1000 genomes]
rs73715492	1.00[AMR][1000 genomes]
rs73715502	1.00[AMR][1000 genomes]
rs73717512	1.00[AMR][1000 genomes]
rs73717948	1.00[AMR][1000 genomes]
rs73717949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717953	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7784460	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608196	chr7:111073710-111794368	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1021527	chr7:111194596-111851619	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv539086	chr7:111194596-111851619	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv531435	chr7:111333900-111926292	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv533924	chr7:111529515-111784369	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv1023261	chr7:111593889-111780337	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	nsv1016663	chr7:111622107-111813223	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv1034249	chr7:111656902-111748774	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv539089	chr7:111656902-111748774	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv889054	chr7:111666943-111739842	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv516034	chr7:111730967-111759584	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111713200-111742400	Weak transcription	Right Ventricle	heart
2	chr7:111720600-111753200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:111721400-111737800	Weak transcription	NHEK	skin
4	chr7:111721400-111743600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:111721600-111732600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:111721600-111736800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:111722200-111734800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:111722200-111736800	Weak transcription	Left Ventricle	heart
9	chr7:111722200-111736800	Weak transcription	Lung	lung
10	chr7:111724600-111746200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:111725000-111733000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:111725000-111737000	Weak transcription	Right Atrium	heart
13	chr7:111725200-111736600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr7:111725200-111743000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:111727000-111736400	Weak transcription	Ovary	ovary
16	chr7:111727000-111749000	Weak transcription	Pancreas	Pancrea
17	chr7:111728200-111732800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr7:111728800-111736800	Weak transcription	Psoas Muscle	Psoas
19	chr7:111728800-111737400	Weak transcription	HUVEC	blood vessel
20	chr7:111730200-111737200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:111730800-111733400	Enhancers	Brain Anterior Caudate	brain
22	chr7:111730800-111733600	Enhancers	Brain Substantia Nigra	brain
23	chr7:111731000-111733000	Enhancers	HepG2	liver
24	chr7:111731000-111733400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr7:111731000-111733600	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr7:111731200-111733400	Enhancers	Brain Cingulate Gyrus	brain
27	chr7:111731400-111733400	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr7:111731600-111733200	Enhancers	Liver	Liver
29	chr7:111731600-111733400	Enhancers	Brain Hippocampus Middle	brain
30	chr7:111731800-111733200	Enhancers	Fetal Lung	lung
31	chr7:111732200-111733400	Enhancers	Brain Angular Gyrus	brain
32	chr7:111732400-111733600	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr7:111732400-111733600	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr7:111732400-111733600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links