Variant report

Variant	rs73715473
Chromosome Location	chr7:111769791-111769792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs55935391	1.00[AMR][1000 genomes]
rs56237403	1.00[AMR][1000 genomes]
rs57297756	1.00[AMR][1000 genomes]
rs61662262	1.00[AMR][1000 genomes]
rs73715410	1.00[AMR][1000 genomes]
rs73715412	1.00[AMR][1000 genomes]
rs73715414	1.00[AMR][1000 genomes]
rs73715415	1.00[AMR][1000 genomes]
rs73715416	1.00[AMR][1000 genomes]
rs73715422	1.00[AMR][1000 genomes]
rs73715431	1.00[AMR][1000 genomes]
rs73715472	1.00[AMR][1000 genomes]
rs73715474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73715492	1.00[AMR][1000 genomes]
rs73715502	1.00[AMR][1000 genomes]
rs73717512	1.00[AMR][1000 genomes]
rs73717948	1.00[AMR][1000 genomes]
rs73717949	1.00[AMR][1000 genomes]
rs73717950	1.00[AMR][1000 genomes]
rs73717953	1.00[AMR][1000 genomes]
rs73717954	1.00[AMR][1000 genomes]
rs7784460	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608196	chr7:111073710-111794368	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1021527	chr7:111194596-111851619	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv539086	chr7:111194596-111851619	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv531435	chr7:111333900-111926292	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv533924	chr7:111529515-111784369	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv1023261	chr7:111593889-111780337	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	nsv1016663	chr7:111622107-111813223	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111749400-111770000	Weak transcription	Pancreas	Pancrea
2	chr7:111749600-111770800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:111753400-111769800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:111757400-111777800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:111759200-111769800	Weak transcription	Psoas Muscle	Psoas
6	chr7:111759200-111770000	Weak transcription	Fetal Lung	lung
7	chr7:111759600-111770000	Weak transcription	Ovary	ovary
8	chr7:111759600-111771200	Weak transcription	Right Atrium	heart
9	chr7:111760000-111770000	Weak transcription	Left Ventricle	heart
10	chr7:111764400-111771000	Weak transcription	Aorta	Aorta
11	chr7:111764400-111772600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:111764800-111770000	Weak transcription	A549	lung
13	chr7:111764800-111772000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:111766200-111770200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:111766200-111771800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:111768200-111770000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:111768200-111772400	Weak transcription	Fetal Brain Female	brain
18	chr7:111768400-111774600	Enhancers	Brain Hippocampus Middle	brain
19	chr7:111768600-111770600	Enhancers	HepG2	liver
20	chr7:111768600-111773800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr7:111769000-111770200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr7:111769000-111770400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr7:111769000-111770400	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr7:111769000-111770400	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr7:111769000-111770400	Flanking Active TSS	Liver	Liver
26	chr7:111769000-111773200	Enhancers	Brain Cingulate Gyrus	brain
27	chr7:111769000-111773200	Enhancers	Colon Smooth Muscle	Colon
28	chr7:111769000-111774400	Enhancers	Brain Anterior Caudate	brain
29	chr7:111769000-111774600	Enhancers	Brain Substantia Nigra	brain
30	chr7:111769200-111771800	Enhancers	Brain Angular Gyrus	brain
31	chr7:111769400-111770000	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr7:111769400-111770400	Enhancers	Right Ventricle	heart
33	chr7:111769400-111770600	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr7:111769400-111771800	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr7:111769400-111772000	Enhancers	HUVEC	blood vessel
36	chr7:111769600-111769800	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr7:111769600-111769800	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr7:111769600-111770200	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr7:111769600-111770200	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr7:111769600-111770400	Enhancers	HMEC	breast
41	chr7:111769600-111771800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr7:111769600-111773400	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links