Variant report

Variant	rs73721470
Chromosome Location	chr7:120458070-120458071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120457286..120459639-chr7:120460525..120462886,2	K562	blood:
2	chr7:120457748..120459607-chr7:120472145..120474237,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs73721468	1.00[AMR][1000 genomes]
rs73721481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721482	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721486	0.86[AFR][1000 genomes]
rs73721487	1.00[AFR][1000 genomes]
rs73721488	0.83[AFR][1000 genomes]
rs73723406	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120425600-120470400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:120427400-120466000	Weak transcription	Fetal Stomach	stomach
3	chr7:120430400-120468200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:120432600-120468400	Weak transcription	Lung	lung
5	chr7:120439400-120469200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:120443000-120488000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:120445200-120494400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr7:120446000-120476200	Weak transcription	Left Ventricle	heart
9	chr7:120446800-120462200	Weak transcription	GM12878-XiMat	blood
10	chr7:120447400-120471400	Weak transcription	Fetal Kidney	kidney
11	chr7:120447800-120465600	Weak transcription	Liver	Liver
12	chr7:120449800-120476000	Weak transcription	HUVEC	blood vessel
13	chr7:120450600-120470400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:120452800-120476000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:120455000-120465800	Weak transcription	Colon Smooth Muscle	Colon
16	chr7:120455000-120467800	Weak transcription	Fetal Heart	heart
17	chr7:120455600-120468400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:120455600-120472200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr7:120455800-120465800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:120455800-120474400	Weak transcription	Fetal Intestine Large	intestine
21	chr7:120455800-120476000	Weak transcription	Fetal Muscle Leg	muscle
22	chr7:120457600-120458200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr7:120457600-120458200	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr7:120457600-120458400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr7:120457600-120458400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr7:120457600-120458400	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr7:120457600-120458400	Enhancers	Stomach Mucosa	stomach
28	chr7:120457800-120458200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr7:120457800-120458400	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr7:120457800-120458400	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr7:120457800-120458400	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr7:120457800-120458400	Enhancers	Fetal Intestine Small	intestine
33	chr7:120457800-120459000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr7:120458000-120462000	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links