Variant report

Variant	rs73721487
Chromosome Location	chr7:120579118-120579119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120577684..120579807-chr7:120581325..120584070,2	K562	blood:
2	chr7:120459576..120460725-chr7:120578360..120579303,5	MCF-7	breast:
3	chr7:120568902..120571112-chr7:120578727..120581601,3	K562	blood:
4	chr7:120445873..120446554-chr7:120578030..120579156,3	MCF-7	breast:
5	chr7:120569435..120571629-chr7:120578727..120581601,3	K562	blood:
6	chr7:120578692..120580456-chr7:120583647..120585611,2	K562	blood:
7	chr7:120497794..120498729-chr7:120578695..120579321,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ING3-2	chr7:120578971-120579428	expReg_chr7_8473_+

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56804074	1.00[AMR][1000 genomes]
rs57736588	1.00[AMR][1000 genomes]
rs57952546	0.83[AFR][1000 genomes]
rs73721470	1.00[AFR][1000 genomes]
rs73721481	1.00[AFR][1000 genomes]
rs73721482	0.83[AFR][1000 genomes]
rs73721486	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721488	0.83[AFR][1000 genomes]
rs73723406	0.83[AFR][1000 genomes]
rs73723410	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120574000-120585200	Weak transcription	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links