Variant report

Variant	rs73721488
Chromosome Location	chr7:120582277-120582278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57952546	1.00[AFR][1000 genomes]
rs73721470	0.83[AFR][1000 genomes]
rs73721481	0.83[AFR][1000 genomes]
rs73721482	1.00[AFR][1000 genomes]
rs73721487	0.83[AFR][1000 genomes]
rs73723406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73723410	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv967472	chr7:120581340-120591647	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120574000-120585200	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:120581400-120582400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:120581400-120582400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:120581600-120582400	Flanking Active TSS	HUVEC	blood vessel
5	chr7:120582000-120582600	Weak transcription	Adipose Nuclei	Adipose
6	chr7:120582000-120585000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:120582200-120585000	Weak transcription	Liver	Liver
8	chr7:120582200-120588600	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links