Variant report

Variant	rs73726017
Chromosome Location	chr7:106815341-106815342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZKSCAN1	chr7:106815272-106815444	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr7:106812705-106815366	A549	lung:	n/a	n/a
3	POLR2A	chr7:106814115-106816107	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:106813942..106815556-chr7:106815570..106817653,2	MCF-7	breast:
2	chr7:106806204..106812770-chr7:106813358..106822449,17	MCF-7	breast:
3	chr7:106813570..106815422-chr7:106818741..106820430,2	MCF-7	breast:
4	chr7:106815323..106817230-chr7:106819825..106822457,2	MCF-7	breast:

Variant related genes	Relation type
HBP1	TF binding region
ENSG00000105856	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17153927	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17154043	1.00[AMR][1000 genomes]
rs56114169	1.00[AMR][1000 genomes]
rs57363445	1.00[AMR][1000 genomes]
rs57687942	0.85[AFR][1000 genomes]
rs59496629	1.00[AMR][1000 genomes]
rs59515828	1.00[AMR][1000 genomes]
rs59550876	1.00[AMR][1000 genomes]
rs60049176	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61026223	1.00[AMR][1000 genomes]
rs61342054	1.00[AMR][1000 genomes]
rs73726018	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73726019	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106810600-106818200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
2	chr7:106810600-106836800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:106810800-106826800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:106810800-106828200	Weak transcription	Esophagus	oesophagus
5	chr7:106810800-106836200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:106811000-106820000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:106811000-106820200	Weak transcription	HSMM	muscle
8	chr7:106811000-106824200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr7:106811000-106826800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:106811000-106826800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:106811000-106828800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr7:106811200-106815600	Weak transcription	Fetal Kidney	kidney
13	chr7:106811200-106817800	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr7:106811200-106818800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr7:106811200-106819400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr7:106811200-106821600	Weak transcription	Thymus	Thymus
17	chr7:106811400-106815600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:106811400-106815800	Enhancers	Liver	Liver
19	chr7:106811400-106815800	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr7:106811400-106819800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:106811400-106819800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:106811400-106820000	Weak transcription	NH-A	brain
23	chr7:106811400-106820200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr7:106811400-106820200	Weak transcription	NHEK	skin
25	chr7:106811400-106820400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr7:106811400-106824800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:106811400-106825200	Weak transcription	Lung	lung
28	chr7:106811400-106825800	Weak transcription	NHLF	lung
29	chr7:106812000-106820000	Weak transcription	HepG2	liver
30	chr7:106812200-106816000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr7:106812200-106817600	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr7:106812200-106819800	Weak transcription	Dnd41	blood
33	chr7:106812200-106820000	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr7:106812200-106820000	Weak transcription	Small Intestine	intestine
35	chr7:106812200-106820200	Weak transcription	Gastric	stomach
36	chr7:106812200-106820400	Weak transcription	Fetal Muscle Leg	muscle
37	chr7:106812200-106825200	Weak transcription	Aorta	Aorta
38	chr7:106812400-106816200	Enhancers	Colon Smooth Muscle	Colon
39	chr7:106812400-106816400	Weak transcription	Left Ventricle	heart
40	chr7:106812400-106819800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr7:106812400-106820200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr7:106812400-106820200	Weak transcription	Placenta	Placenta
43	chr7:106812400-106822600	Weak transcription	Fetal Brain Male	brain
44	chr7:106812400-106826200	Weak transcription	Spleen	Spleen
45	chr7:106812600-106819600	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr7:106812800-106815600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr7:106812800-106818000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr7:106812800-106819800	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr7:106813200-106815400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr7:106813200-106815600	Genic enhancers	Primary B cells from peripheral blood	blood

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