Variant report

Variant	rs59496629
Chromosome Location	chr7:106909914-106909915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17153927	1.00[AMR][1000 genomes]
rs17154043	1.00[AMR][1000 genomes]
rs56114169	1.00[AMR][1000 genomes]
rs57363445	1.00[AMR][1000 genomes]
rs59515828	1.00[AMR][1000 genomes]
rs59550876	1.00[AMR][1000 genomes]
rs60049176	1.00[AMR][1000 genomes]
rs61026223	1.00[AMR][1000 genomes]
rs61342054	1.00[AMR][1000 genomes]
rs73724068	1.00[AMR][1000 genomes]
rs73724069	1.00[AMR][1000 genomes]
rs73724070	1.00[AMR][1000 genomes]
rs73726017	1.00[AMR][1000 genomes]
rs73726018	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73726019	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv888939	chr7:106849393-107045700	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2756226	chr7:106850755-106944563	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv1016691	chr7:106880953-106960515	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1015615	chr7:106888529-106962332	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1024903	chr7:106897237-106965091	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv1034707	chr7:106897237-106966215	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv1825788	chr7:106897237-107136320	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv1024793	chr7:106900877-107170312	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv1033064	chr7:106903099-106949640	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106846000-106925800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr7:106851000-106946000	Weak transcription	Esophagus	oesophagus
3	chr7:106853400-106925600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr7:106874000-106917800	Weak transcription	Osteobl	bone
5	chr7:106874000-106922600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:106874000-106929200	Weak transcription	NH-A	brain
7	chr7:106874000-106945600	Weak transcription	Pancreas	Pancrea
8	chr7:106883000-106918800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:106883400-106910200	Weak transcription	Lung	lung
10	chr7:106883400-106911400	Weak transcription	Right Ventricle	heart
11	chr7:106886400-106971400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr7:106886800-106946000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:106887000-106935800	Weak transcription	Small Intestine	intestine
14	chr7:106887600-106910200	Weak transcription	Adipose Nuclei	Adipose
15	chr7:106887600-106910400	Weak transcription	Psoas Muscle	Psoas
16	chr7:106888600-106910000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr7:106888600-106926600	Weak transcription	Ovary	ovary
18	chr7:106888600-106930800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr7:106888600-106931600	Weak transcription	Dnd41	blood
20	chr7:106888800-106910200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:106888800-106910200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:106888800-106910200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr7:106888800-106911400	Weak transcription	Fetal Intestine Small	intestine
24	chr7:106888800-106913200	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr7:106888800-106917400	Weak transcription	HSMM	muscle
26	chr7:106888800-106930800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:106888800-106932000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr7:106888800-106933400	Weak transcription	Fetal Stomach	stomach
29	chr7:106888800-106946000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:106888800-106946200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr7:106888800-106999400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr7:106889000-106910200	Weak transcription	Fetal Muscle Leg	muscle
33	chr7:106889000-106933400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr7:106889000-106934400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr7:106889200-106910200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr7:106889200-106914800	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr7:106889200-106922600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr7:106889600-106920400	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr7:106890800-106921800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr7:106890800-106945600	Weak transcription	Aorta	Aorta
41	chr7:106891000-106923000	Weak transcription	Primary B cells from peripheral blood	blood
42	chr7:106891000-106931000	Weak transcription	Primary hematopoietic stem cells	blood
43	chr7:106892800-106918200	Weak transcription	Gastric	stomach
44	chr7:106893400-106922800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:106894400-106910400	Weak transcription	Left Ventricle	heart
46	chr7:106894600-106910200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr7:106895200-106910200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr7:106895600-106910200	Weak transcription	K562	blood
49	chr7:106898600-106917600	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr7:106898800-106927000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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