Variant report

Variant	rs73726018
Chromosome Location	chr7:106889903-106889904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:106877913..106879800-chr7:106888048..106890401,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17153927	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17154043	1.00[AMR][1000 genomes]
rs56114169	1.00[AMR][1000 genomes]
rs57363445	1.00[AMR][1000 genomes]
rs59496629	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59515828	1.00[AMR][1000 genomes]
rs59550876	1.00[AMR][1000 genomes]
rs60049176	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61026223	1.00[AMR][1000 genomes]
rs61342054	1.00[AMR][1000 genomes]
rs73724068	1.00[AMR][1000 genomes]
rs73724069	1.00[AMR][1000 genomes]
rs73724070	1.00[AMR][1000 genomes]
rs73726017	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73726019	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv888939	chr7:106849393-107045700	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2756226	chr7:106850755-106944563	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv1016691	chr7:106880953-106960515	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1015615	chr7:106888529-106962332	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106846000-106925800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr7:106850400-106890000	Weak transcription	Hela-S3	cervix
3	chr7:106850800-106895200	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:106851000-106897600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr7:106851000-106946000	Weak transcription	Esophagus	oesophagus
6	chr7:106851200-106892400	Weak transcription	Gastric	stomach
7	chr7:106851200-106892600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr7:106853400-106925600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr7:106865600-106890600	Weak transcription	Aorta	Aorta
10	chr7:106865600-106892400	Weak transcription	HepG2	liver
11	chr7:106866600-106909600	Weak transcription	Placenta	Placenta
12	chr7:106874000-106890200	Weak transcription	GM12878-XiMat	blood
13	chr7:106874000-106917800	Weak transcription	Osteobl	bone
14	chr7:106874000-106922600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr7:106874000-106929200	Weak transcription	NH-A	brain
16	chr7:106874000-106945600	Weak transcription	Pancreas	Pancrea
17	chr7:106875000-106890600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr7:106875400-106908000	Weak transcription	HMEC	breast
19	chr7:106875600-106898400	Weak transcription	HUVEC	blood vessel
20	chr7:106876600-106890000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr7:106878800-106895000	Weak transcription	K562	blood
22	chr7:106881200-106895600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr7:106882400-106890000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:106883000-106918800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr7:106883400-106910200	Weak transcription	Lung	lung
26	chr7:106883400-106911400	Weak transcription	Right Ventricle	heart
27	chr7:106883600-106894200	Weak transcription	Fetal Heart	heart
28	chr7:106884200-106890600	Weak transcription	Stomach Mucosa	stomach
29	chr7:106884800-106890800	Strong transcription	Primary T cells from cord blood	blood
30	chr7:106884800-106892600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr7:106885000-106897800	Weak transcription	Fetal Thymus	thymus
32	chr7:106885200-106890800	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr7:106885400-106897000	Weak transcription	NHEK	skin
34	chr7:106885600-106891000	Strong transcription	Primary B cells from peripheral blood	blood
35	chr7:106886400-106971400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr7:106886800-106890600	Weak transcription	Brain Hippocampus Middle	brain
37	chr7:106886800-106946000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr7:106887000-106890000	Strong transcription	Primary B cells from cord blood	blood
39	chr7:106887000-106935800	Weak transcription	Small Intestine	intestine
40	chr7:106887400-106898200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr7:106887600-106890800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr7:106887600-106910200	Weak transcription	Adipose Nuclei	Adipose
43	chr7:106887600-106910400	Weak transcription	Psoas Muscle	Psoas
44	chr7:106887800-106890400	Weak transcription	Fetal Kidney	kidney
45	chr7:106887800-106891000	Strong transcription	Primary hematopoietic stem cells	blood
46	chr7:106887800-106903000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr7:106888400-106900600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr7:106888600-106890600	Weak transcription	Thymus	Thymus
49	chr7:106888600-106891400	Weak transcription	Brain Substantia Nigra	brain
50	chr7:106888600-106894000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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