Variant report

Variant	rs73726104
Chromosome Location	chr7:150096565-150096566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:150096528-150096929	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr7:150095767-150096906	K562	blood:	n/a	n/a
3	POLR2A	chr7:150095804-150098518	K562	blood:	n/a	n/a
4	POLR2A	chr7:150096565-150096803	HepG2	liver:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:150063876..150080670-chr7:150093696..150109118,65	MCF-7	breast:
2	chr7:150018966..150021939-chr7:150095611..150098750,5	K562	blood:
3	chr7:150069152..150071203-chr7:150094833..150097484,2	MCF-7	breast:
4	chr7:150073288..150077950-chr7:150093880..150099928,8	MCF-7	breast:
5	chr7:150087569..150089555-chr7:150095693..150097782,2	MCF-7	breast:
6	chr7:150063752..150069023-chr7:150095376..150104764,21	MCF-7	breast:
7	chr7:150018966..150021782-chr7:150094675..150098930,7	K562	blood:
8	chr7:150079370..150081091-chr7:150094962..150096635,2	MCF-7	breast:

No data

Variant related genes	Relation type
ZNF775	TF binding region
ENSG00000214022	Chromatin interaction
ENSG00000240449	Chromatin interaction
ENSG00000127399	Chromatin interaction
ENSG00000106526	Chromatin interaction
ENSG00000239377	Chromatin interaction
ENSG00000196456	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10266063	1.00[AMR][1000 genomes]
rs10269285	1.00[AMR][1000 genomes]
rs28535865	1.00[AMR][1000 genomes]
rs28556649	1.00[AMR][1000 genomes]
rs28710951	1.00[AMR][1000 genomes]
rs73728121	1.00[AMR][1000 genomes]
rs7784480	1.00[AMR][1000 genomes]
rs940450	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv889453	chr7:150009838-150104410	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv889454	chr7:150009838-150115183	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv889455	chr7:150013393-150104410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv889456	chr7:150013393-150115183	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
9	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
10	nsv889457	chr7:150020295-150104410	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
11	nsv889458	chr7:150020295-150115183	Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
12	nsv521407	chr7:150020295-150118590	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
13	nsv465211	chr7:150035526-150104410	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
14	nsv608991	chr7:150035526-150104410	Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
15	nsv608992	chr7:150045910-150115183	Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
16	esv1819714	chr7:150055837-150154944	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
17	nsv889462	chr7:150060163-150108536	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
18	esv3398950	chr7:150092519-150096817	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150077400-150100800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr7:150077800-150096800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:150077800-150097000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr7:150078000-150100600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr7:150078200-150097200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:150078200-150097200	Weak transcription	HUVEC	blood vessel
7	chr7:150078600-150096600	Weak transcription	NHEK	skin
8	chr7:150080000-150100200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr7:150080200-150100200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr7:150086000-150096800	Weak transcription	Osteobl	bone
11	chr7:150086200-150096600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:150086400-150097200	Weak transcription	Stomach Mucosa	stomach
13	chr7:150086400-150100400	Weak transcription	Brain Angular Gyrus	brain
14	chr7:150086400-150100600	Weak transcription	Fetal Brain Male	brain
15	chr7:150086600-150097000	Weak transcription	NH-A	brain
16	chr7:150086800-150101000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:150087000-150101200	Weak transcription	Liver	Liver
18	chr7:150087400-150097000	Weak transcription	HepG2	liver
19	chr7:150088000-150100800	Weak transcription	HSMMtube	muscle
20	chr7:150088000-150101000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr7:150088200-150096800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:150088200-150101200	Weak transcription	Fetal Kidney	kidney
23	chr7:150088400-150096600	Weak transcription	GM12878-XiMat	blood
24	chr7:150088400-150097200	Weak transcription	HSMM	muscle
25	chr7:150091000-150100800	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr7:150091600-150101000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr7:150091600-150101400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr7:150092000-150096600	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr7:150092600-150096600	Strong transcription	Brain Germinal Matrix	brain
30	chr7:150092600-150096600	Strong transcription	Fetal Thymus	thymus
31	chr7:150092600-150096800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr7:150092600-150097600	Strong transcription	Fetal Intestine Small	intestine
33	chr7:150092600-150097800	Strong transcription	Fetal Stomach	stomach
34	chr7:150092800-150096800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr7:150092800-150097200	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr7:150092800-150097200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr7:150092800-150097800	Strong transcription	Fetal Brain Female	brain
38	chr7:150092800-150098200	Strong transcription	Fetal Muscle Leg	muscle
39	chr7:150092800-150099600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr7:150093000-150096600	Strong transcription	Dnd41	blood
41	chr7:150093000-150097200	Strong transcription	Brain Anterior Caudate	brain
42	chr7:150093200-150097600	Strong transcription	Thymus	Thymus
43	chr7:150093200-150100800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr7:150093400-150097200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr7:150093400-150100400	Weak transcription	Primary B cells from cord blood	blood
46	chr7:150093600-150096600	Strong transcription	Brain Inferior Temporal Lobe	brain
47	chr7:150093600-150096800	Strong transcription	Brain Hippocampus Middle	brain
48	chr7:150094400-150097200	Strong transcription	Brain Substantia Nigra	brain
49	chr7:150095000-150097200	Enhancers	Fetal Heart	heart
50	chr7:150095200-150096800	Strong transcription	Colon Smooth Muscle	Colon

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